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Sequence analysis

Genome-Wide Identification and Analysis of MAPK and MAPKK Gene Families in Brachypodium distachyon

Lihong Chen, Wei Hu, [ ... ], Guangyuan He

Accurate Simulation and Detection of Coevolution Signals in Multiple Sequence Alignments

Sharon H. Ackerman, Elisabeth R. Tillier, Domenico L. Gatti

Tick-Box for 3′-End Formation of Mitochondrial Transcripts in Ixodida, Basal Chelicerates and Drosophila

Matteo Montagna, Davide Sassera, [ ... ], Carmela Gissi

Interactome-Wide Prediction of Protein-Protein Binding Sites Reveals Effects of Protein Sequence Variation in Arabidopsis thaliana

Felipe Leal Valentim, Frank Neven, Peter Boyen, Aalt D. J. van Dijk

A Hybrid Distance Measure for Clustering Expressed Sequence Tags Originating from the Same Gene Family

Keng-Hoong Ng, Chin-Kuan Ho, Somnuk Phon-Amnuaisuk

lociNGS: A Lightweight Alternative for Assessing Suitability of Next-Generation Loci for Evolutionary Analysis

Sarah M. Hird

The Pectin Lyases in Arabidopsis thaliana: Evolution, Selection and Expression Profiles

Jun Cao

Hypoxylon pulicicidum sp. nov. (Ascomycota, Xylariales), a Pantropical Insecticide-Producing Endophyte

Gerald F. Bills, Victor González-Menéndez, [ ... ], Marc Stadler

Evolutionary History of Contagious Bovine Pleuropneumonia Using Next Generation Sequencing of Mycoplasma mycoides Subsp. mycoides “Small Colony”

Virginie Dupuy, Lucía Manso-Silván, [ ... ], François Thiaucourt

Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum

Gerda Saxer, Paul Havlak, [ ... ], David C. Queller

Predicting the Functional Effect of Amino Acid Substitutions and Indels

Yongwook Choi, Gregory E. Sims, [ ... ], Agnes P. Chan

Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au, Jason G. Underwood, Lawrence Lee, Wing Hung Wong

Genome-Wide Analysis of Androgen Receptor Targets Reveals COUP-TF1 as a Novel Player in Human Prostate Cancer

Ruth Perets, Tommy Kaplan, [ ... ], Eli Pikarsky

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