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Sequence analysis

Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution

Olga V. Kalinina, Heike Oberwinkler, [ ... ], John A. G. Briggs

De Novo Sequencing and Transcriptome Analysis of the Central Nervous System of Mollusc Lymnaea stagnalis by Deep RNA Sequencing

Hisayo Sadamoto, Hironobu Takahashi, [ ... ], Yoshinori Asakawa

miRSystem: An Integrated System for Characterizing Enriched Functions and Pathways of MicroRNA Targets

Tzu-Pin Lu, Chien-Yueh Lee, [ ... ], Eric Y. Chuang

A Transgenic Transcription Factor (TaDREB3) in Barley Affects the Expression of MicroRNAs and Other Small Non-Coding RNAs

Michael Hackenberg, Bu-Jun Shi, Perry Gustafson, Peter Langridge

SIMPLEX: Cloud-Enabled Pipeline for the Comprehensive Analysis of Exome Sequencing Data

Maria Fischer, Rene Snajder, [ ... ], Gernot Stocker

Crystal Structures of the Network-Forming Short-Arm Tips of the Laminin β1 and γ1 Chains

Federico Carafoli, Sadaf-Ahmahni Hussain, Erhard Hohenester

Synthetic Spike-in Standards Improve Run-Specific Systematic Error Analysis for DNA and RNA Sequencing

Justin M. Zook, Daniel Samarov, [ ... ], Marc Salit

Unique Alterations of an Ultraconserved Non-Coding Element in the 3′UTR of ZIC2 in Holoprosencephaly

Erich Roessler, Ping Hu, [ ... ], Maximilian Muenke

A Genomic Island in Salmonella enterica ssp. salamae Provides New Insights on the Genealogy of the Locus of Enterocyte Effacement

P. Scott Chandry, Simon Gladman, [ ... ], Narelle Fegan

Analyzing Multi-locus Plant Barcoding Datasets with a Composition Vector Method Based on Adjustable Weighted Distance

Chi Pang Li, Zu Guo Yu, Guo Sheng Han, Ka Hou Chu

Next-Generation Sequencing of the Porcine Skeletal Muscle Transcriptome for Computational Prediction of MicroRNA Gene Targets

Tara G. McDaneld, Tim P. L. Smith, Gregory P. Harhay, Ralph T. Wiedmann

An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes

Xin Jin, Mingze He, [ ... ], Xiaoning Wang

Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis

Neelanjana Janardan, Rajesh K. Harijan, Rikkert K. Wierenga, Mathur R. N. Murthy

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