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Sequence analysis

Statistical Approaches to Use a Model Organism for Regulatory Sequences Annotation of Newly Sequenced Species

Pietro Liò, Claudia Angelini, Italia De Feis, Viet-Anh Nguyen

Diversity and Complexity in Chromatin Recognition by TFII-I Transcription Factors in Pluripotent Embryonic Stem Cells and Embryonic Tissues

Aleksandr V. Makeyev, Badam Enkhmandakh, [ ... ], Dashzeveg Bayarsaihan

A Public HTLV-1 Molecular Epidemiology Database for Sequence Management and Data Mining

Thessika Hialla Almeida Araujo, Leandro Inacio Souza-Brito, [ ... ], Luiz Carlos Junior Alcantara

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

Charles K. Lee, Craig W. Herbold, [ ... ], S. Craig Cary

Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts

Emily S. Charlson, Kyle Bittinger, [ ... ], Frederic D. Bushman

Transposable Elements in TDP-43-Mediated Neurodegenerative Disorders

Wanhe Li, Ying Jin, [ ... ], Josh Dubnau

Protein Disorder and Short Conserved Motifs in Disordered Regions Are Enriched near the Cytoplasmic Side of Single-Pass Transmembrane Proteins

Ilias Stavropoulos, Nora Khaldi, [ ... ], Denis C. Shields

Identification and Sequence Analysis of Metazoan tRNA 3′-End Processing Enzymes tRNase Zs

Zhikang Wang, Jia Zheng, [ ... ], Ying Huang

Implications of Pyrosequencing Error Correction for Biological Data Interpretation

Matthew G. Bakker, Zheng J. Tu, James M. Bradeen, Linda L. Kinkel

New Insights on the Sialidase Protein Family Revealed by a Phylogenetic Analysis in Metazoa

Edoardo Giacopuzzi, Roberto Bresciani, [ ... ], Giuseppe Borsani

YY1-Binding Sites Provide Central Switch Functions in the PARP-1 Gene Expression Network

Martina Doetsch, Angela Gluch, [ ... ], Melita Vidaković

Reverse Taxonomy for Elucidating Diversity of Insect-Associated Nematodes: A Case Study with Termites

Natsumi Kanzaki, Robin M. Giblin-Davis, [ ... ], E. Allen Herre

Frequency Matrix Approach Demonstrates High Sequence Quality in Avian BARCODEs and Highlights Cryptic Pseudogenes

Mark Y. Stoeckle, Kevin C. R. Kerr

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