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Sequence analysis

Evolutionary History of Contagious Bovine Pleuropneumonia Using Next Generation Sequencing of Mycoplasma mycoides Subsp. mycoides “Small Colony”

Virginie Dupuy, Lucía Manso-Silván, [ ... ], François Thiaucourt

Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum

Gerda Saxer, Paul Havlak, [ ... ], David C. Queller

Predicting the Functional Effect of Amino Acid Substitutions and Indels

Yongwook Choi, Gregory E. Sims, [ ... ], Agnes P. Chan

Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au, Jason G. Underwood, Lawrence Lee, Wing Hung Wong

Genome-Wide Analysis of Androgen Receptor Targets Reveals COUP-TF1 as a Novel Player in Human Prostate Cancer

Ruth Perets, Tommy Kaplan, [ ... ], Eli Pikarsky

Disordered Binding Regions and Linear Motifs—Bridging the Gap between Two Models of Molecular Recognition

Bálint Mészáros, Zsuzsanna Dosztányi, István Simon

A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

Hongmei Jiang, Lingling An, [ ... ], Yuqing Qiu

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

Bin Liu, Xiaolong Wang, [ ... ], Xun Lan

Assessment of Algorithms for Inferring Positional Weight Matrix Motifs of Transcription Factor Binding Sites Using Protein Binding Microarray Data

Yaron Orenstein, Chaim Linhart, Ron Shamir

De Novo Foliar Transcriptome of Chenopodium amaranticolor and Analysis of Its Gene Expression During Virus-Induced Hypersensitive Response

Yongqiang Zhang, Xinwu Pei, [ ... ], Weimin Li

Evolutionary History of Assassin Bugs (Insecta: Hemiptera: Reduviidae): Insights from Divergence Dating and Ancestral State Reconstruction

Wei Song Hwang, Christiane Weirauch

Comparing Molecular Variation to Morphological Species Designations in the Deep-Sea Coral Narella Reveals New Insights into Seamount Coral Ranges

Amy R. Baco, Stephen D. Cairns

Transcriptomic and Proteomic Analyses of a Wolbachia-Free Filarial Parasite Provide Evidence of Trans-Kingdom Horizontal Gene Transfer

Samantha N. McNulty, Sahar Abubucker, [ ... ], Peter U. Fischer

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