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Sequence analysis

A missense mutation in the highly conserved TNF-like domain of Ectodysplasin A is the candidate causative variant for X-linked hypohidrotic ectodermal dysplasia in Limousin cattle: Clinical, histological, and molecular analyses

Frederik Krull, Martina Bleyer, Jana Schäfer, Bertram Brenig

published 22 Jan 2024

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Machine learning-based approach KEVOLVE efficiently identifies SARS-CoV-2 variant-specific genomic signatures

Dylan Lebatteux, Hugo Soudeyns, Isabelle Boucoiran, Soren Gantt, Abdoulaye Baniré Diallo

published 19 Jan 2024

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Finding Candida auris in public metagenomic repositories

Jorge E. Mario-Vasquez, Ujwal R. Bagal, Elijah Lowe, Aleksandr Morgulis, John Phan, D. Joseph Sexton, Sergey Shiryev, Rytis Slatkevičius, Rory Welsh, Anastasia P. Litvintseva, Matthew Blumberg, Richa Agarwala, Nancy A. Chow

published 19 Jan 2024

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Kuura—An automated workflow for analyzing WES and WGS data

Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey

published 18 Jan 2024

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AutoPhy: Automated phylogenetic identification of novel protein subfamilies

Adrian N. Ortiz-Velez, Jeet Sukumaran, Ryin Rouzbehani, Scott T. Kelley

published 11 Jan 2024

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SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

published 05 Jan 2024

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Characterization of a novel bacteriophage endolysin (LysAB1245) with extended lytic activity against distinct capsular types associated with Acinetobacter baumannii resistance

Rosesathorn Soontarach, Potjanee Srimanote, Buppa Arechanajan, Alisa Nakkaew, Supayang Piyawan Voravuthikunchai, Sarunyou Chusri

published 02 Jan 2024

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Genetic diversity and phylogeography of Phlebotomus argentipes (Diptera: Psychodidae, Phlebotominae), using COI and ND4 mitochondrial gene sequences

W. Methsala Madurangi Wedage, Iresha N. Harischandra, O. V. D. S. Jagathpriya Weerasena, B. G. D. N. K. De Silva

published 29 Dec 2023

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Crystal structure of the Arabidopsis SPIRAL2 C-terminal domain reveals a p80-Katanin-like domain

Derek L. Bolhuis, Ram Dixit, Kevin C. Slep

published 29 Dec 2023

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An efficient constructive heuristic for the rectangular packing problem with rotations

Xusheng Zhao, Yunqing Rao, Peng Qi, Qianhang Lyu, Piaoruo Yang, Shoubo Yu

published 28 Dec 2023

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The evolutionary loss of the Eh1 motif in FoxE1 in the lineage of placental mammals

Mahak Sharma, Victoria M. Larow, Nataliia Dobychina, Daniel S. Kessler, Maria M. Krasilnikova, Sergey Yaklichkin

published 27 Dec 2023

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Molecular characterization of mitochondrial COI gene sequences in Micraspis allardi from Pakistan

Rida Asrar, Mariyam Masood, Imran Bodlah, Ghulam Rasool, Nazia Suleman, Sumaira Yousaf

published 27 Dec 2023

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In silico analysis of the Seven IN Absentia (SINA) genes in bread wheat sheds light on their structure in plants

Jane Roche, Claire Guérin, Céline Dupuits, Cherkaoui Elmodafar, Pascale Goupil, Said Mouzeyar

published 21 Dec 2023

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