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Sequence analysis

Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

Martin Kemler, Jeff Garnas, Michael J. Wingfield, Marieka Gryzenhout, Kerry-Anne Pillay, Bernard Slippers

published 16 Dec 2013

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Brassinosteroids Regulate Plant Growth through Distinct Signaling Pathways in Selaginella and Arabidopsis

Jinyeong Cheon, Shozo Fujioka, Brian P. Dilkes, Sunghwa Choe

published 13 Dec 2013

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SRComp: Short Read Sequence Compression Using Burstsort and Elias Omega Coding

Jeremy John Selva, Xin Chen

published 13 Dec 2013

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Evaluation of Assembly Strategies Using RNA-Seq Data Associated with Grain Development of Wheat (Triticum aestivum L.)

Huai-Zhu Li, Xiang Gao, Xiao-Yan Li, Qi-Jiao Chen, Jian Dong, Wan-Chun Zhao

published 12 Dec 2013

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Whole-Exome Sequencing to Identify a Novel LMNA Gene Mutation Associated with Inherited Cardiac Conduction Disease

Chun-Chi Lai, Yung-Hsin Yeh, Wen-Ping Hsieh, Chi-Tai Kuo, Wen-Ching Wang, Chia-Han Chu, Chiu-Lien Hung, Chia-Yang Cheng, Hsin-Yi Tsai, Jia-Lin Lee, Chuan-Yi Tang, Lung-An Hsu

published 12 Dec 2013

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In Vivo Characterization of Dynein-Driven nanovectors Using Drosophila Oocytes

Nadège Parassol, Céline Bienvenu, Cécile Boglio, Sébastien Fiorucci, Delphine Cerezo, Xiao-Min Yu, Guilhem Godeau, Jacques Greiner, Pierre Vierling, Stéphane Noselli, Christophe Di Giorgio, Véronique Van De Bor

published 12 Dec 2013

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TFpredict and SABINE: Sequence-Based Prediction of Structural and Functional Characteristics of Transcription Factors

Johannes Eichner, Florian Topf, Andreas Dräger, Clemens Wrzodek, Dierk Wanke, Andreas Zell

published 12 Dec 2013

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New rRNA Gene-Based Phylogenies of the Alphaproteobacteria Provide Perspective on Major Groups, Mitochondrial Ancestry and Phylogenetic Instability

Matteo P. Ferla, J. Cameron Thrash, Stephen J. Giovannoni, Wayne M. Patrick

published 11 Dec 2013

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Functional Characterization of ECP-Heparin Interaction: A Novel Molecular Model

Ta-Jen Hung, Noboru Tomiya, Tse-Hao Chang, Wen-Chi Cheng, Ping-Hsueh Kuo, Sim-Kun Ng, Pei-Chun Lien, Yuan-Chuan Lee, Margaret Dah-Tsyr Chang

published 11 Dec 2013

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Next Generation Sequencing Analysis of Human Platelet PolyA+ mRNAs and rRNA-Depleted Total RNA

Antheia Kissopoulou, Jon Jonasson, Tomas L. Lindahl, Abdimajid Osman

published 11 Dec 2013

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POGs2: A Web Portal to Facilitate Cross-Species Inferences About Protein Architecture and Function in Plants

Michael Tomcal, Nicholas Stiffler, Alice Barkan

published 10 Dec 2013

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Evaluating the Impact of Different Sequence Databases on Metaproteome Analysis: Insights from a Lab-Assembled Microbial Mixture

Alessandro Tanca, Antonio Palomba, Massimo Deligios, Tiziana Cubeddu, Cristina Fraumene, Grazia Biosa, Daniela Pagnozzi, Maria Filippa Addis, Sergio Uzzau

published 09 Dec 2013

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When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

Shea N. Gardner, Barry G. Hall

published 09 Dec 2013

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