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Sequence analysis

Distribution of Gifsy-3 and of Variants of ST64B and Gifsy-1 Prophages amongst Salmonella enterica Serovar Typhimurium Isolates: Evidence that Combinations of Prophages Promote Clonality

Lester Hiley, Ning-Xia Fang, Gino R. Micalizzi, John Bates

published 24 Jan 2014

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A New Exhaustive Method and Strategy for Finding Motifs in ChIP-Enriched Regions

Caiyan Jia, Matthew B. Carson, Yang Wang, Youfang Lin, Hui Lu

published 24 Jan 2014

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LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins

Samuel S. Shepard, C. Todd Davis, Justin Bahl, Pierre Rivailler, Ian A. York, Ruben O. Donis

published 23 Jan 2014

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The Discovery of phiAGATE, A Novel Phage Infecting Bacillus pumilus, Leads to New Insights into the Phylogeny of the Subfamily Spounavirinae

Jakub Barylski, Grzegorz Nowicki, Anna Goździcka-Józefiak

published 23 Jan 2014

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Sequence Similarity of Clostridium difficile Strains by Analysis of Conserved Genes and Genome Content Is Reflected by Their Ribotype Affiliation

Hedwig Kurka, Armin Ehrenreich, Wolfgang Ludwig, Marc Monot, Maja Rupnik, Frederic Barbut, Alexander Indra, Bruno Dupuy, Wolfgang Liebl

published 23 Jan 2014

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Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

Himabindu Kudapa, Sarwar Azam, Andrew G. Sharpe, Bunyamin Taran, Rong Li, Benjamin Deonovic, Connor Cameron, Andrew D. Farmer, Steven B. Cannon, Rajeev K. Varshney

published 23 Jan 2014

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Molecular and Genetic Characterization of Natural HIV-1 Tat Exon-1 Variants from North India and Their Functional Implications

Larance Ronsard, Sneh Lata, Jyotsna Singh, Vishnampettai G. Ramachandran, Shukla Das, Akhil C. Banerjea

published 23 Jan 2014

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CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

published 22 Jan 2014

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The Use of High-Throughput DNA Sequencing in the Investigation of Antigenic Variation: Application to Neisseria Species

John K. Davies, Paul F. Harrison, Ya-Hsun Lin, Stephanie Bartley, Chen Ai Khoo, Torsten Seemann, Catherine S. Ryan, Charlene M. Kahler, Stuart A. Hill

published 22 Jan 2014

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Genome-Wide Identification and Evolutionary Analysis of the SBP-Box Gene Family in Castor Bean

Shu-Dong Zhang, Li-Zhen Ling

published 22 Jan 2014

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Peptide Binding Properties of the Three PDZ Domains of Bazooka (Drosophila Par-3)

Cao Guo Yu, Raffi Tonikian, Corinna Felsensteiner, Jacquelyn R. Jhingree, Darrell Desveaux, Sachdev S. Sidhu, Tony J. C. Harris

published 22 Jan 2014

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On the Value of Intra-Motif Dependencies of Human Insulator Protein CTCF

Ralf Eggeling, André Gohr, Jens Keilwagen, Michaela Mohr, Stefan Posch, Andrew D. Smith, Ivo Grosse

published 22 Jan 2014

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A Conserved Non-Canonical Docking Mechanism Regulates the Binding of Dual Specificity Phosphatases to Cell Integrity Mitogen-Activated Protein Kinases (MAPKs) in Budding and Fission Yeasts

Almudena Sacristán-Reviriego, Marisa Madrid, José Cansado, Humberto Martín, María Molina

published 22 Jan 2014

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