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Sequence analysis

A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

published 26 Apr 2024

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Bioinformatics pipeline for the systematic mining genomic and proteomic variation linked to rare diseases: The example of monogenic diabetes

Ksenia G. Kuznetsova, Jakub Vašíček, Dafni Skiadopoulou, Janne Molnes, Miriam Udler, Stefan Johansson, Pål Rasmus Njølstad, Alisa Manning, Marc Vaudel

published 18 Apr 2024

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A fast comparative genome browser for diverse bacteria and archaea

Morgan N. Price, Adam P. Arkin

published 09 Apr 2024

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LAGSwin: Local attention guided Swin-transformer for thermal infrared sports object detection

Hengran Meng, Shuqi Si, Bingfei Mao, Jia Zhao, Liping Wu

published 09 Apr 2024

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Complete plastid genome of Iris orchioides and comparative analysis with 19 Iris plastomes

Tae-Young Choi, Soo-Rang Lee

published 05 Apr 2024

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In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities

Gentile Francesco Ficetola, Alessia Guerrieri, Isabel Cantera, Aurelie Bonin

published 05 Apr 2024

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Unveiling hidden structural patterns in the SARS-CoV-2 genome: Computational insights and comparative analysis

Alison Ziesel, Hosna Jabbari

published 04 Apr 2024

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Comparing modern identification methods for wild bees: Metabarcoding and image-based morphological taxonomic assignment

Cassandra D. Smith, Robert S. Cornman, Jennifer A. Fike, Johanna M. Kraus, Sara J. Oyler-McCance, Carrie E. Givens, Michelle L. Hladik, Mark W. Vandever, Dana W. Kolpin, Kelly L. Smalling

published 02 Apr 2024

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Structural and functional characterization of sulfurtransferase from Frondihabitans sp. PAMC28461

Hackwon Do, Dieu Linh Nguyen, Yong-Yoon Ahn, Yewon Nam, YoonJi Kang, HoeJung Oh, Jisub Hwang, Se Jong Han, Kitae Kim, Jun Hyuck Lee

published 25 Mar 2024

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Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent

Alisa Prusokiene, Neil Boonham, Adrian Fox, Thomas P. Howard

published 21 Mar 2024

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Description of Saprolegnia velencensis sp. n. (Oomycota), a novel water mold species from Lake Velence, Hungary

Viktória Verebélyi, Noémi Erdei, Tímea Hardy, Edit Eszterbauer

published 20 Mar 2024

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Genome-wide identification and characterization of protein phosphatase 2C (PP2C) gene family in sunflower (Helianthus annuus L.) and their expression profiles in response to multiple abiotic stresses

Nasrin Akter, Md Shohel Ul Islam, Md. Shahedur Rahman, Fatema Tuz Zohra, Shaikh Mizanur Rahman, M. Manirujjaman, Md. Abdur Rauf Sarkar

published 20 Mar 2024

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Prevalence and genome features of lake sinai virus isolated from Apis mellifera in the Republic of Korea

Thi-Thu Nguyen, Mi-Sun Yoo, A-Tai Truong, So Youn Youn, Dong-Ho Kim, Se-Ji Lee, Soon-Seek Yoon, Yun Sang Cho

published 19 Mar 2024

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