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Sequence analysis

Clustering HLA Class I Superfamilies Using Structural Interaction Patterns

Sumitro Harjanto, Lisa F. P. Ng, Joo Chuan Tong

published 27 Jan 2014

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Identification of Gene-Specific Polymorphisms and Association with Capsaicin Pathway Metabolites in Capsicum annuum L. Collections

Umesh K. Reddy, Aldo Almeida, Venkata L. Abburi, Suresh Babu Alaparthi, Desiree Unselt, Gerald Hankins, Minkyu Park, Doil Choi, Padma Nimmakayala

published 27 Jan 2014

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Tetrahedral Gray Code for Visualization of Genome Information

Natsuhiro Ichinose, Tetsushi Yada, Osamu Gotoh

published 27 Jan 2014

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Expression and Properties of the Highly Alkalophilic Phenylalanine Ammonia-Lyase of Thermophilic Rubrobacter xylanophilus

Klaudia Kovács, Gergely Bánóczi, Andrea Varga, Izabella Szabó, András Holczinger, Gábor Hornyánszky, Imre Zagyva, Csaba Paizs, Beáta G. Vértessy, László Poppe

published 27 Jan 2014

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Full-Genome Characterisation of Orungo, Lebombo and Changuinola Viruses Provides Evidence for Co-Evolution of Orbiviruses with Their Arthropod Vectors

Fauziah Mohd Jaafar, Mourad Belhouchet, Manjunatha Belaganahalli, Robert B. Tesh, Peter P. C. Mertens, Houssam Attoui

published 24 Jan 2014

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Distribution of Gifsy-3 and of Variants of ST64B and Gifsy-1 Prophages amongst Salmonella enterica Serovar Typhimurium Isolates: Evidence that Combinations of Prophages Promote Clonality

Lester Hiley, Ning-Xia Fang, Gino R. Micalizzi, John Bates

published 24 Jan 2014

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A New Exhaustive Method and Strategy for Finding Motifs in ChIP-Enriched Regions

Caiyan Jia, Matthew B. Carson, Yang Wang, Youfang Lin, Hui Lu

published 24 Jan 2014

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LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins

Samuel S. Shepard, C. Todd Davis, Justin Bahl, Pierre Rivailler, Ian A. York, Ruben O. Donis

published 23 Jan 2014

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The Discovery of phiAGATE, A Novel Phage Infecting Bacillus pumilus, Leads to New Insights into the Phylogeny of the Subfamily Spounavirinae

Jakub Barylski, Grzegorz Nowicki, Anna Goździcka-Józefiak

published 23 Jan 2014

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Sequence Similarity of Clostridium difficile Strains by Analysis of Conserved Genes and Genome Content Is Reflected by Their Ribotype Affiliation

Hedwig Kurka, Armin Ehrenreich, Wolfgang Ludwig, Marc Monot, Maja Rupnik, Frederic Barbut, Alexander Indra, Bruno Dupuy, Wolfgang Liebl

published 23 Jan 2014

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Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

Himabindu Kudapa, Sarwar Azam, Andrew G. Sharpe, Bunyamin Taran, Rong Li, Benjamin Deonovic, Connor Cameron, Andrew D. Farmer, Steven B. Cannon, Rajeev K. Varshney

published 23 Jan 2014

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Molecular and Genetic Characterization of Natural HIV-1 Tat Exon-1 Variants from North India and Their Functional Implications

Larance Ronsard, Sneh Lata, Jyotsna Singh, Vishnampettai G. Ramachandran, Shukla Das, Akhil C. Banerjea

published 23 Jan 2014

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CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

published 22 Jan 2014

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