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Sequence analysis

Clustering HLA Class I Superfamilies Using Structural Interaction Patterns

Sumitro Harjanto, Lisa F. P. Ng, Joo Chuan Tong

Identification of Gene-Specific Polymorphisms and Association with Capsaicin Pathway Metabolites in Capsicum annuum L. Collections

Umesh K. Reddy, Aldo Almeida, [ ... ], Padma Nimmakayala

Tetrahedral Gray Code for Visualization of Genome Information

Natsuhiro Ichinose, Tetsushi Yada, Osamu Gotoh

Expression and Properties of the Highly Alkalophilic Phenylalanine Ammonia-Lyase of Thermophilic Rubrobacter xylanophilus

Klaudia Kovács, Gergely Bánóczi, [ ... ], László Poppe

Full-Genome Characterisation of Orungo, Lebombo and Changuinola Viruses Provides Evidence for Co-Evolution of Orbiviruses with Their Arthropod Vectors

Fauziah Mohd Jaafar, Mourad Belhouchet, [ ... ], Houssam Attoui

Distribution of Gifsy-3 and of Variants of ST64B and Gifsy-1 Prophages amongst Salmonella enterica Serovar Typhimurium Isolates: Evidence that Combinations of Prophages Promote Clonality

Lester Hiley, Ning-Xia Fang, Gino R. Micalizzi, John Bates

A New Exhaustive Method and Strategy for Finding Motifs in ChIP-Enriched Regions

Caiyan Jia, Matthew B. Carson, [ ... ], Hui Lu

LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins

Samuel S. Shepard, C. Todd Davis, [ ... ], Ruben O. Donis

The Discovery of phiAGATE, A Novel Phage Infecting Bacillus pumilus, Leads to New Insights into the Phylogeny of the Subfamily Spounavirinae

Jakub Barylski, Grzegorz Nowicki, Anna Goździcka-Józefiak

Sequence Similarity of Clostridium difficile Strains by Analysis of Conserved Genes and Genome Content Is Reflected by Their Ribotype Affiliation

Hedwig Kurka, Armin Ehrenreich, [ ... ], Wolfgang Liebl

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

Himabindu Kudapa, Sarwar Azam, [ ... ], Rajeev K. Varshney

Molecular and Genetic Characterization of Natural HIV-1 Tat Exon-1 Variants from North India and Their Functional Implications

Larance Ronsard, Sneh Lata, [ ... ], Akhil C. Banerjea

CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

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