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Sequence analysis

A Model-Based Approach to Identify Binding Sites in CLIP-Seq Data

Tao Wang, Beibei Chen, MinSoo Kim, Yang Xie, Guanghua Xiao

published 08 Apr 2014

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Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii

Benjamin Backfisch, Vitaly V. Kozin, Stephan Kirchmaier, Kristin Tessmar-Raible, Florian Raible

published 08 Apr 2014

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MC64-ClustalWP2: A Highly-Parallel Hybrid Strategy to Align Multiple Sequences in Many-Core Architectures

David Díaz, Francisco J. Esteban, Pilar Hernández, Juan Antonio Caballero, Antonio Guevara, Gabriel Dorado, Sergio Gálvez

published 07 Apr 2014

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Estimated Secondary Structure Propensities within V1/V2 Region of HIV gp120 Are an Important Global Antibody Neutralization Sensitivity Determinant

Maxim Totrov

published 04 Apr 2014

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A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data

Andrew L. Hipp, Deren A. R. Eaton, Jeannine Cavender-Bares, Elisabeth Fitzek, Rick Nipper, Paul S. Manos

published 04 Apr 2014

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Identification of Novel Regulatory Small RNAs in Acinetobacter baumannii

Rajnikant Sharma, Sankalp Arya, Supriya Deepak Patil, Atin Sharma, Pradeep Kumar Jain, Naveen Kumar Navani, Ranjana Pathania

published 04 Apr 2014

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Parallel Clustering Algorithm for Large-Scale Biological Data Sets

Minchao Wang, Wu Zhang, Wang Ding, Dongbo Dai, Huiran Zhang, Hao Xie, Luonan Chen, Yike Guo, Jiang Xie

published 04 Apr 2014

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Deep Sequencing to Identify the Causes of Viral Encephalitis

Benjamin K. Chan, Theodore Wilson, Kael F. Fischer, John D. Kriesel

published 03 Apr 2014

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Genetic Variability of Plasmodium malariae dihydropteroate synthase (dhps) in Four Asian Countries

Naowarat Tanomsing, Mayfong Mayxay, Paul N. Newton, Francois Nosten, Christiane Dolecek, Tran Tinh Hien, Nicholas J. White, Nicholas P. J. Day, Arjen M. Dondorp, Mallika Imwong

published 03 Apr 2014

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Evolutionary Origins of C-Terminal (GPP)n 3-Hydroxyproline Formation in Vertebrate Tendon Collagen

David M. Hudson, Rachel Werther, MaryAnn Weis, Jiann-Jiu Wu, David R. Eyre

published 02 Apr 2014

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Full Genome Virus Detection in Fecal Samples Using Sensitive Nucleic Acid Preparation, Deep Sequencing, and a Novel Iterative Sequence Classification Algorithm

Matthew Cotten, Bas Oude Munnink, Marta Canuti, Martin Deijs, Simon J. Watson, Paul Kellam, Lia van der Hoek

published 02 Apr 2014

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Solution Structure of CXCL5 — A Novel Chemokine and Adipokine Implicated in Inflammation and Obesity

Krishna Mohan Sepuru, Krishna Mohan Poluri, Krishna Rajarathnam

published 02 Apr 2014

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Identification and Comparative Analysis of the Tegillarca granosa Haemocytes MicroRNA Transcriptome in Response to Cd Using a Deep Sequencing Approach

Yongbo Bao, Lili Zhang, Yinghui Dong, Zhihua Lin

published 01 Apr 2014

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