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Sequence analysis

SCRMshaw: Supervised cis-regulatory module prediction for insect genomes

Hasiba Asma, Luna Liu, Marc S. Halfon

published 05 Dec 2024

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MetaCONNET: A metagenomic polishing tool for long-read assemblies

Bingru Sun, Jian Guo, Hao Jin, Zijie Jin, Yaping Sun, Yuanchen Mao, Fuli Xie, Yun He, Zhihong Sun, Wei Li, Igor Ivanov, Hui Tian

published 03 Dec 2024

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Specific PCR primer designed from genome data for rapid detection of Fusarium oxysporum f. sp. cubense tropical race 4 in the Cavendish banana

Shunsuke Nozawa, Dan Charlie Joy Pangilinan, G. Alvindia Dionisio, Kyoko Watanabe

published 02 Dec 2024

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Applying a cytochrome c oxidase I barcode for Leishmania species typing

Carlos Mata-Somarribas, Grazielle Cardoso das Graças, Luiza de Oliveira R. Pereira, Mariana Côrtes Boité, Lilian Motta Cantanhêde, Camila Patrício Braga Filgueira, Adrián Fallas, Leana Quirós-Rojas, Karina A. Morelli, Gabriel Eduardo Melim Ferreira, Elisa Cupolillo

published 02 Dec 2024

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Systematic analysis of the relationship between fold-dependent flexibility and artificial intelligence protein structure prediction

Neshatul Haque, Jessica B. Wagenknecht, Brian D. Ratnasinghe, Michael T. Zimmermann

published 26 Nov 2024

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An easy-to-use pipeline to analyze amplicon-based Next Generation Sequencing results of human mitochondrial DNA from degraded samples

Daniel R. Cuesta-Aguirre, Assumpció Malgosa, Cristina Santos

published 21 Nov 2024

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Syntactic analysis of SMOSS model combined with improved LSTM model: Taking English writing teaching as an example

Ke Yan

published 15 Nov 2024

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Characterizing the role of PP2A B’’ family subunits in mechanical stress response and plant development through calcium and ABA signaling in Arabidopsis thaliana

Hyuk Sung Yoon, Kaien Fujino, Shenkui Liu, Tetsuo Takano, Daisuke Tsugama

published 14 Nov 2024

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Mutational analysis of Phanerochaete chrysosporium´s purine transporter

Mariana Barraco-Vega, Manuel Sanguinetti, Gabriela da Rosa, Gianna Cecchetto

published 31 Oct 2024

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Reference Sequence Browser: An R application with a user-friendly GUI to rapidly query sequence databases

Sriram Ramesh, Samuel Rapp, Jorge Tapias Gomez, Benjamin Levine, Daniel Tapias-Gomez, Dickson Chung, Zia Truong

published 31 Oct 2024

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Characterizing the gut microbiome of diarrheal mink under farmed conditions: A metagenomic analysis

Shuo Liu, Jianwei Ren, Jiyuan Li, Detao Yu, Hang Xu, Fang He, Nianfeng Li, Ling Zou, Zhi Cao, Jianxin Wen

published 30 Oct 2024

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Using intrahost single nucleotide variant data to predict SARS-CoV-2 detection cycle threshold values

Lea Duesterwald, Marcus Nguyen, Paul Christensen, S. Wesley Long, Randall J. Olsen, James M. Musser, James J. Davis

published 30 Oct 2024

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Identifying factors associated with instructor implementation of three-dimensional assessment in undergraduate biology courses

Crystal Uminski, Brian A. Couch

published 22 Oct 2024

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