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Sequence analysis

Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses

Arthur W. Pightling, Nicholas Petronella, Franco Pagotto

Insertions or Deletions (Indels) in the rrn 16S-23S rRNA Gene Internal Transcribed Spacer Region (ITS) Compromise the Typing and Identification of Strains within the Acinetobacter calcoaceticus-baumannii (Acb) Complex and Closely Related Members

Christopher Maslunka, Bianca Gifford, [ ... ], Robert J. Seviour

Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

Peter Skewes-Cox, Thomas J. Sharpton, Katherine S. Pollard, Joseph L. DeRisi

Oligomerization Mechanisms of an H-NS Family Protein, Pmr, Encoded on the Plasmid pCAR1 Provide a Molecular Basis for Functions of H-NS Family Members

Chiho Suzuki, Kohei Kawazuma, [ ... ], Hideaki Nojiri

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles F. A. de Bourcy, Iwijn De Vlaminck, [ ... ], Stephen R. Quake

Molecular Analysis of Aedes aegypti Classical Protein Tyrosine Phosphatases Uncovers an Ortholog of Mammalian PTP-1B Implicated in the Control of Egg Production in Mosquitoes

Debora Monteiro Moretti, Lalima Gagan Ahuja, [ ... ], Mário Alberto Cardoso Silva-Neto

Transcriptome Analysis of the Oil-Rich Tea Plant, Camellia oleifera, Reveals Candidate Genes Related to Lipid Metabolism

En-Hua Xia, Jian-Jun Jiang, [ ... ], Li-Zhi Gao

Genome-Wide Prediction of the Polymorphic Ser Gene Family in Tetrahymena thermophila Based on Motif Analysis

Patrath Ponsuwanna, Krittikorn Kümpornsin, Thanat Chookajorn

The Global Trade in Fresh Produce and the Vagility of Plant Viruses: A Case Study in Garlic

Stephen J. Wylie, Hua Li, Muhammad Saqib, Michael G. K. Jones

A Rank-Based Sequence Aligner with Applications in Phylogenetic Analysis

Liviu P. Dinu, Radu Tudor Ionescu, Alexandru I. Tomescu

Assessment of Species Diversity and Distribution of an Ancient Diatom Lineage Using a DNA Metabarcoding Approach

Deepak Nanjappa, Stephane Audic, [ ... ], Adriana Zingone

Targeted Disruption of the Intracellular Domain of Receptor FgfrL1 in Mice

Gilles Bluteau, Lei Zhuang, Ruth Amann, Beat Trueb

The Complete Genome Sequence of Escherichia coli EC958: A High Quality Reference Sequence for the Globally Disseminated Multidrug Resistant E. coli O25b:H4-ST131 Clone

Brian M. Forde, Nouri L. Ben Zakour, [ ... ], Scott A. Beatson

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