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Sequence analysis

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Bruce J. Walker, Thomas Abeel, [ ... ], Ashlee M. Earl

DNA Barcoding the Native Flowering Plants and Conifers of Wales

Natasha de Vere, Tim C. G. Rich, [ ... ], Mike J. Wilkinson

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling, Bob Mau, Nicole T. Perna

A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region

W. John Kress, David L. Erickson

Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types

Julia Salzman, Charles Gawad, [ ... ], Patrick O. Brown

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

Hirokazu Toju, Akifumi S. Tanabe, Satoshi Yamamoto, Hirotoshi Sato

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss, Dirk Gevers, Sarah L. Westcott

Searching for Tissue-Specific Expression Pattern-Linked Nucleotides of UGT1A Isoforms

Wei Zhang, Wanqing Liu, Federico Innocenti, Mark J. Ratain

Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees

Dongying Wu, Martin Wu, [ ... ], Jonathan A. Eisen

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

Kenan Hadziavdic, Katrine Lekang, [ ... ], Christofer Troedsson

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

Rachel Poretsky, Luis M. Rodriguez-R, [ ... ], Konstantinos T. Konstantinidis

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

Trygve E. Bakken, Rebecca D. Hodge, [ ... ], Bosiljka Tasic

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

John Christian Gaby, Daniel H. Buckley

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