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Sequence analysis

Identification of Cocconeis neothumensis var. marina using a polyphasic approach including ultrastructure and gene annotation

Emanuele Somma, Maria Costantini, Chiara Pennesi, Nadia Ruocco, Olga De Castro, Antonio Terlizzi, Valerio Zupo

published 13 Feb 2025

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A new method for the reproducible development of aptamers (Neomers)

Cathal Meehan, Erika L. Hamilton, Chloé G. Mansour, Soizic Lecocq, Cole J. Drake, Yisi An, Emily Rodrigues, Gregory Penner

published 12 Feb 2025

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WDR75: An essential protein for ribosome assembly undergoing purifying selection

Lauren Lee, Justen B. Whittall

published 11 Feb 2025

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In Silico identification and characterization of SOS gene family in soybean: Potential of calcium in salinity stress mitigation

Anam Hameed, M. Asaf Khan, M. Hammad Nadeem Tahir, Madeeha Shahzad Lodhi, Saima Muzammil, Muhammad Shafiq, Tsanko Gechev, Muhammad Faisal

published 10 Feb 2025

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Highly sensitive molecular assay based on Identical Multi-Repeat Sequence (IMRS) algorithm for the detection of Trichomonas vaginalis infection

Clement Shiluli, Shwetha Kamath, Bernard N. Kanoi, Racheal Kimani, Bernard Oduor, Hussein M. Abkallo, Michael Maina, Harrison Waweru, Moses Kamita, Nicole Pamme, Joshua Dupaty, Catherine M. Klapperich, Srinivasa Raju Lolabattu, Jesse Gitaka

published 07 Feb 2025

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Comparisons of performances of structural variants detection algorithms in solitary or combination strategy

De-Min Duan, Chinyi Cheng, Yu-Shu Huang, An-ko Chung, Pin-Xuan Chen, Yu-An Chen, Jacob Shujui Hsu, Pei-Lung Chen

published 06 Feb 2025

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Assembly of the salt-secreting mangrove Avicennia rumphiana

Jeremy R. Shearman, Chaiwat Naktang, Chutima Sonthirod, Wasitthee Kongkachana, Sonicha U-thoomporn, Nukoon Jomchai, Chatree Maknual, Suchart Yamprasai, Poonsri Wanthongchai, Wirulda Pootakham, Sithichoke Tangphatsornruang

published 05 Feb 2025

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AutoPVPrimer: A comprehensive AI-Enhanced pipeline for efficient plant virus primer design and assessment

Abozar Ghorbani, Mahsa Rostami, Elham Ashrafi-Dehkordi, Pietro Hiram Guzzi

published 30 Jan 2025

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HIV-1 resistance mutations and genetic diversity among children failing antiretroviral treatment in five healthcare facilities in Benin, West Africa

Edwige Hermione Dagba Gbessin, Edmond Tchiakpe, René Kpemahouton Keke, Nicole Vidal, Michel Kiréopori Gomgnimbou, Haziz Sina, Euloge Senan Adjou, Aldric Afangnihoun, Moussa Bachabi, Akadiri Yessoufou, Abdoul-Salam Ouedraogo, Lamine Baba-Moussa

published 29 Jan 2025

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The ionic liquid-assisted sample preparation method pTRUST allows sensitive proteome characterization of a variety of bacterial endospores to aid in the search for protein biomarkers

Masato Taoka, Ritsuko Kuwana, Yoshinari Murakami, Akiko Kashima, Yuko Nobe, Takamasa Uekita, Hiromu Takamatsu, Tohru Ichimura

published 24 Jan 2025

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Aligned membranes regulate wound healing via MMP12 secreted by macrophages

Hongli Ma, Limin Gong, Xi Yang, Hui Fang, Jiacai He, Chenbing Wang

published 15 Jan 2025

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Detection of SARS-CoV-2 and a possible variant in shelter cats

Ogi Okwumabua, Nancy Bradley-Siemens, Catherine Cruz, Lauren Chittick, Melissa Thompson

published 13 Jan 2025

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Next-generation sequencing protocol of hematopoietic stem cells (HSCs). Step-by-step overview and troubleshooting guide

Justyna Jarczak, Kamila Bujko, Katarzyna Brzeźniakiewicz-Janus, Mariusz Ratajczak, Magdalena Kucia

published 09 Jan 2025

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