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Sequence analysis

Combatting antibiotic resistance in Gardnerella vaginalis: A comparative in silico investigation for drug target identification

Rabbia Riaz, Kanwal Khan, Saltanat Aghayeva, Reaz Uddin

published 12 Mar 2025

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Sequences within and upstream of the mouse Ets1 gene drive high level expression in B cells, but are not sufficient for consistent expression in T cells

Alyssa Kearly, Prontip Saelee, Jonathan Bard, Satrajit Sinha, Anne Satterthwaite, Lee Ann Garrett-Sinha

published 07 Mar 2025

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Exploring bioactive compound origins: Profiling gene cluster signatures related to biosynthesis in microbiomes of Sof Umer Cave, Ethiopia

Abu Feyisa Meka, Gessesse Kebede Bekele, Musin Kelel Abas, Mesfin Tafesse Gemeda

published 06 Mar 2025

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Harmonizing and integrating the NCI Genomic Data Commons through accessible, interactive, and cloud-enabled workflows

Ling-Hong Hung, Bryce Fukuda, Robert Schmitz, Varik Hoang, Wes Lloyd, Ka Yee Yeung

published 04 Mar 2025

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PCR-based CRISPR/Cas9 system for fluorescent tagging: A tool for studying Candida parapsilosis virulence

Tibor Nemeth, Andrea Zarnocki, Anett Ladanyi, Csaba Papp, Ferhan Ayaydin, Gabor Janos Szebeni, Attila Gacser

published 24 Feb 2025

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Mutational alterations in the QRDR regions associated with fluoroquinolone resistance in Pseudomonas aeruginosa of clinical origin from Savar, Dhaka

Md. Shamsul Arefin, Meftahul Jannat Mitu, Shomaia Yasmin Mitu, Azmery Nurjahan, Mir Mobin, Shamsun Nahar, Hasnain Anjum, M. Hasibur Rahman

published 24 Feb 2025

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“Pet effect” patterns: Dynamics of animal presence and caregiver affect across (tele)work and non-work contexts

Joni Delanoeije, Miriam Engels, Mayke Janssens

published 20 Feb 2025

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NPR1-like genes in Theobroma cacao: Evolutionary insights and potential in enhancing resistance to Phytophthora megakarya

Muhammad Umar Rasheed, Aiman Malik, Muhammad Zeshan Haider, Adnan Sami, Muhammad Shafiq, Qurban Ali, Muhammad Arshad Javed, Ansar Ali

published 14 Feb 2025

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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site

Rebecca A. Reiss, Peter A. Guerra, Oleg Makhnin, Matthew Kellom

published 14 Feb 2025

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Identification of Cocconeis neothumensis var. marina using a polyphasic approach including ultrastructure and gene annotation

Emanuele Somma, Maria Costantini, Chiara Pennesi, Nadia Ruocco, Olga De Castro, Antonio Terlizzi, Valerio Zupo

published 13 Feb 2025

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A new method for the reproducible development of aptamers (Neomers)

Cathal Meehan, Erika L. Hamilton, Chloé G. Mansour, Soizic Lecocq, Cole J. Drake, Yisi An, Emily Rodrigues, Gregory Penner

published 12 Feb 2025

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WDR75: An essential protein for ribosome assembly undergoing purifying selection

Lauren Lee, Justen B. Whittall

published 11 Feb 2025

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In Silico identification and characterization of SOS gene family in soybean: Potential of calcium in salinity stress mitigation

Anam Hameed, M. Asaf Khan, M. Hammad Nadeem Tahir, Madeeha Shahzad Lodhi, Saima Muzammil, Muhammad Shafiq, Tsanko Gechev, Muhammad Faisal

published 10 Feb 2025

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