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Sequence analysis

Epigenetic background of lineage-specific gene expression landscapes of four Staphylococcus aureus hospital isolates

Ilya S. Korotetskiy, Sergey V. Shilov, Tatyana V. Kuznetsova, Natalya Zubenko, Lyudmila Ivanova, Oleg N. Reva

published 05 May 2025

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Coevolution in human small Heat Shock Protein 1 is promoted by interactions between the Alpha-Crystallin domain and the disordered regions

Vanesa Racigh, Luciana Rodriguez Sawicki, Facundo Nicolas Eric Bravo, Maria Silvina Fornasari

published 05 May 2025

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INR Smooth: Interframe noise relation-based smooth video synthesis on diffusion models

Cuihong Yu, Cheng Han, Chao Zhang

published 29 Apr 2025

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High-performance protocol for ultra-short DNA sequencing using Oxford Nanopore Technology (ONT)

Lukas Žemaitis, Rūta Palepšienė, Simonas Juzėnas, Gediminas Alzbutas, Pierre-Yves Burgi, Thomas Heinis, Jérôme Charmet, Silvia Angeloni Suter, Martin Jost, Renaldas Raišutis, Friedrich Simmel, Ignas Galminas

published 29 Apr 2025

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A divide-and-conquer approach based on deep learning for long RNA secondary structure prediction: Focus on pseudoknots identification

Loïc Omnes, Eric Angel, Pierre Bartet, François Radvanyi, Fariza Tahi

published 25 Apr 2025

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Identification of Large Japanese field mouse Apodemus speciosus food plant resources in an industrial green space using DNA metabarcoding

Taichi Fujii, Hirokazu Kawamoto, Tomoyasu Shirako, Masatoshi Nakamura, Motoyasu Minami

published 24 Apr 2025

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Optimizing lipocalin sequence classification with ensemble deep learning models

Yonglin Zhang, Lezheng Yu, Li Xue, Fengjuan Liu, Runyu Jing, Jiesi Luo

published 16 Apr 2025

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Perceptual judgments are resistant to the advisor’s perceived level of trustworthiness: A deep fake approach

Mathias Van der Biest, Sam Verschooren, Frederick Verbruggen, Marcel Brass

published 16 Apr 2025

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Mapping the temporal transcriptomic signature of a viral pathogen through CAGE and nanopore sequencing

Dóra Tombácz, Balázs Kakuk, Gábor Torma, Ádám Fülöp, Ákos Dörmő, Gábor Gulyás, Zsolt Csabai, Zsolt Boldogkői

published 15 Apr 2025

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Bioinformatics analysis and development of functional markers for TaMYB4-1A in wheat

Dan Zhao, Yuru Ma, Yufeng Yang, Zhaoyang Li, Chaoran Wang, Yuhan Fu, Yang Chen, Tengteng Zhang, Yi Ding, Huiqiang Wang, Xuehui Zhang, Hao Zhang

published 15 Apr 2025

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Multi-scale prototype convolutional network for few-shot semantic segmentation

Ding Xu, Shun Yu, Jingxuan Zhou, Fusen Guo, Lin Li, Jishizhan Chen

published 15 Apr 2025

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Comparative genomics of Mycobacterium avium subsp. hominissuis strains within a group of captive lowland tapirs

Hanka Brangsch, Sandra Marcordes, Anne Busch, Michael Weber, Silver A. Wolf, Torsten Semmler, Dirk Höper, Sten Calvelage, Jörg Linde, Stefanie A. Barth

published 01 Apr 2025

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The impact of software and criteria on the selection of best-fit nucleotide substitution models for molecular evolutionary genetic analysis

Xingguang Li, Olayinka Sunday Okoh, Nídia Sequeira Trovão

published 26 Mar 2025

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