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Sequence analysis

Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++

Jorge González-Domínguez, Yongchao Liu, Bertil Schmidt

published 05 Jan 2016

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Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas

Teresita M. Porter, Shadi Shokralla, Donald Baird, G. Brian Golding, Mehrdad Hajibabaei

published 05 Jan 2016

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Characterization and Expression of the Zebrafish qki Paralogs

Katarzyna J. Radomska, Jonathan Sager, Bryn Farnsworth, Åsa Tellgren-Roth, Giulia Tuveri, Christiane Peuckert, Petronella Kettunen, Elena Jazin, Lina S. Emilsson

published 04 Jan 2016

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Characterization of Oyster Voltage-Dependent Anion Channel 2 (VDAC2) Suggests Its Involvement in Apoptosis and Host Defense

Yingxiang Li, Linlin Zhang, Tao Qu, Li Li, Guofan Zhang

published 04 Jan 2016

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SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

Matija Korpar, Martin Šošić, Dino Blažeka, Mile Šikić

published 31 Dec 2015

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Identification of a Flavivirus Sequence in a Marine Arthropod

Michael J. Conway

published 30 Dec 2015

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Application of a Novel “Pan-Genome”-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains

Diego Chaves-Moreno, Melissa L. Wos-Oxley, Ruy Jáuregui, Eva Medina, Andrew P. A. Oxley, Dietmar H. Pieper

published 30 Dec 2015

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Structural Motifs Critical for In Vivo Function and Stability of the RecQ-Mediated Genome Instability Protein Rmi1

Jessica A. Kennedy, Salahuddin Syed, Kristina H. Schmidt

published 30 Dec 2015

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In Silico Comparative Transcriptome Analysis of Two Color Morphs of the Common Coral Trout (Plectropomus Leopardus)

Le Wang, Cuiping Yu, Liang Guo, Haoran Lin, Zining Meng

published 29 Dec 2015

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Two Predicted Transmembrane Domains Exclude Very Long Chain Fatty acyl-CoAs from the Active Site of Mouse Wax Synthase

Steffen Kawelke, Ivo Feussner

published 29 Dec 2015

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Tissue Restricted Splice Junctions Originate Not Only from Tissue-Specific Gene Loci, but Gene Loci with a Broad Pattern of Expression

Matthew S. Hestand, Zheng Zeng, Stephen J. Coleman, Jinze Liu, James N. MacLeod

published 29 Dec 2015

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Ontology Alignment Repair through Modularization and Confidence-Based Heuristics

Emanuel Santos, Daniel Faria, Catia Pesquita, Francisco M. Couto

published 28 Dec 2015

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Taxonomic Characterization of Honey Bee (Apis mellifera) Pollen Foraging Based on Non-Overlapping Paired-End Sequencing of Nuclear Ribosomal Loci

R. Scott Cornman, Clint R. V. Otto, Deborah Iwanowicz, Jeffery S. Pettis

published 23 Dec 2015

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