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Sequence analysis

Comparing Residue Clusters from Thermophilic and Mesophilic Enzymes Reveals Adaptive Mechanisms

Deanne W. Sammond, Noah Kastelowitz, [ ... ], Yannick J. Bomble

Estimation of a Killer Whale (Orcinus orca) Population’s Diet Using Sequencing Analysis of DNA from Feces

Michael J. Ford, Jennifer Hempelmann, [ ... ], Linda K. Park

SeqFeatR for the Discovery of Feature-Sequence Associations

Bettina Budeus, Jörg Timm, Daniel Hoffmann

Decoding Biomass-Sensing Regulons of Clostridium thermocellum Alternative Sigma-I Factors in a Heterologous Bacillus subtilis Host System

Iván Muñoz-Gutiérrez, Lizett Ortiz de Ora, [ ... ], Ilya Borovok

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

Loren A. Honaas, Eric K. Wafula, [ ... ], Claude W. dePamphilis

“Candidatus Fokinia solitaria”, a Novel “Stand-Alone” Symbiotic Lineage of Midichloriaceae (Rickettsiales)

Franziska Szokoli, Elena Sabaneyeva, [ ... ], Giulio Petroni

Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++

Jorge González-Domínguez, Yongchao Liu, Bertil Schmidt

Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas

Teresita M. Porter, Shadi Shokralla, [ ... ], Mehrdad Hajibabaei

Characterization and Expression of the Zebrafish qki Paralogs

Katarzyna J. Radomska, Jonathan Sager, [ ... ], Lina S. Emilsson

Characterization of Oyster Voltage-Dependent Anion Channel 2 (VDAC2) Suggests Its Involvement in Apoptosis and Host Defense

Yingxiang Li, Linlin Zhang, [ ... ], Guofan Zhang

SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

Matija Korpar, Martin Šošić, Dino Blažeka, Mile Šikić

Identification of a Flavivirus Sequence in a Marine Arthropod

Michael J. Conway

Application of a Novel “Pan-Genome”-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains

Diego Chaves-Moreno, Melissa L. Wos-Oxley, [ ... ], Dietmar H. Pieper

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