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Sequence analysis

Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding

Wei Fan, Jie Zong, Zhijing Luo, Mingjiao Chen, Xiangxiang Zhao, Dabing Zhang, Yiping Qi, Zheng Yuan

published 22 Jan 2016

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Essentiality Assessment of Cysteinyl and Lysyl-tRNA Synthetases of Mycobacterium smegmatis

Sudha Ravishankar, Anisha Ambady, Rayapadi G. Swetha, Anand Anbarasu, Sudha Ramaiah, Vasan K. Sambandamurthy

published 21 Jan 2016

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Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

James A. Stapleton, Jeongwoon Kim, John P. Hamilton, Ming Wu, Luiz C. Irber, Rohan Maddamsetti, Bryan Briney, Linsey Newton, Dennis R. Burton, C. Titus Brown, Christina Chan, C. Robin Buell, Timothy A. Whitehead

published 20 Jan 2016

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On the Evolutionary History of Uleiella chilensis, a Smut Fungus Parasite of Araucaria araucana in South America: Uleiellales ord. nov. in Ustilaginomycetes

Kai Riess, Max E. Schön, Matthias Lutz, Heinz Butin, Franz Oberwinkler, Sigisfredo Garnica

published 20 Jan 2016

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CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking

Lei Hua, Yang Song, Namhee Kim, Christian Laing, Jason T. L. Wang, Tamar Schlick

published 20 Jan 2016

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A PDZ-Like Motif in the Biliary Transporter ABCB4 Interacts with the Scaffold Protein EBP50 and Regulates ABCB4 Cell Surface Expression

Quitterie Venot, Jean-Louis Delaunay, Laura Fouassier, Danièle Delautier, Thomas Falguières, Chantal Housset, Michèle Maurice, Tounsia Aït-Slimane

published 20 Jan 2016

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Novel Structural and Functional Motifs in cellulose synthase (CesA) Genes of Bread Wheat (Triticum aestivum, L.)

Simerjeet Kaur, Kanwarpal S. Dhugga, Kulvinder Gill, Jaswinder Singh

published 15 Jan 2016

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A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing

Elizabeth P. St. John, Birgitte B. Simen, Gregory S. Turenchalk, Michael S. Braverman, Isabella Abbate, Jeroen Aerssens, Olivier Bouchez, Christian Gabriel, Jacques Izopet, Karolin Meixenberger, Francesca Di Giallonardo, Ralph Schlapbach, Roger Paredes, James Sakwa, Gudrun G. Schmitz-Agheguian, Alexander Thielen, Martin Victor, Karin J. Metzner, Martin P. Däumer, 454 HIV-1 Alpha Study Group

published 12 Jan 2016

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Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

Mark Davids, Floor Hugenholtz, Vitor Martins dos Santos, Hauke Smidt, Michiel Kleerebezem, Peter J. Schaap

published 12 Jan 2016

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Identification and Functional Analysis of the Mycophenolic Acid Gene Cluster of Penicillium roqueforti

Abdiel Del-Cid, Carlos Gil-Durán, Inmaculada Vaca, Juan F. Rojas-Aedo, Ramón O. García-Rico, Gloria Levicán, Renato Chávez

published 11 Jan 2016

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Use of a Probabilistic Motif Search to Identify Histidine Phosphotransfer Domain-Containing Proteins

Defne Surujon, David I. Ratner

published 11 Jan 2016

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Discovery and Characterization of a Thermostable and Highly Halotolerant GH5 Cellulase from an Icelandic Hot Spring Isolate

Dimitra Zarafeta, Dimitrios Kissas, Christopher Sayer, Sóley R. Gudbergsdottir, Efthymios Ladoukakis, Michail N. Isupov, Aristotelis Chatziioannou, Xu Peng, Jennifer A. Littlechild, Georgios Skretas, Fragiskos N. Kolisis

published 07 Jan 2016

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DNA Barcode Analysis of Thrips (Thysanoptera) Diversity in Pakistan Reveals Cryptic Species Complexes

Romana Iftikhar, Muhammad Ashfaq, Akhtar Rasool, Paul D. N. Hebert

published 07 Jan 2016

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