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Sequence analysis

In Silico Prediction of Neuropeptides/Peptide Hormone Transcripts in the Cheilostome Bryozoan Bugula neritina

Yue Him Wong, Li Yu, Gen Zhang, Li-Sheng He, Pei-Yuan Qian

published 18 Aug 2016

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Positive Selection Pressure Drives Variation on the Surface-Exposed Variable Proteins of the Pathogenic Neisseria

Jenny Wachter, Stuart Hill

published 17 Aug 2016

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SVM-Prot 2016: A Web-Server for Machine Learning Prediction of Protein Functional Families from Sequence Irrespective of Similarity

Ying Hong Li, Jing Yu Xu, Lin Tao, Xiao Feng Li, Shuang Li, Xian Zeng, Shang Ying Chen, Peng Zhang, Chu Qin, Cheng Zhang, Zhe Chen, Feng Zhu, Yu Zong Chen

published 15 Aug 2016

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NF-Y Binding Site Architecture Defines a C-Fos Targeted Promoter Class

Martin Haubrock, Fabian Hartmann, Edgar Wingender

published 12 Aug 2016

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Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms

Jhih-Wei Jian, Pavadai Elumalai, Thejkiran Pitti, Chih Yuan Wu, Keng-Chang Tsai, Jeng-Yih Chang, Hung-Pin Peng, An-Suei Yang

published 11 Aug 2016

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Efficient Gene Tree Correction Guided by Genome Evolution

Emmanuel Noutahi, Magali Semeria, Manuel Lafond, Jonathan Seguin, Bastien Boussau, Laurent Guéguen, Nadia El-Mabrouk, Eric Tannier

published 11 Aug 2016

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A Cost-Effective Approach to Sequence Hundreds of Complete Mitochondrial Genomes

Joaquin C. B. Nunez, Marjorie F. Oleksiak

published 09 Aug 2016

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Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

Vincent Ranwez

published 09 Aug 2016

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Genetic Barrier to Direct Acting Antivirals in HCV Sequences Deposited in the European Databank

Dimas Alexandre Kliemann, Cristiane Valle Tovo, Ana Beatriz Gorini da Veiga, André Luiz Machado, John West

published 09 Aug 2016

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A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands

Ikuo Uchiyama, Jacob Albritton, Masaki Fukuyo, Kenji K. Kojima, Koji Yahara, Ichizo Kobayashi

published 09 Aug 2016

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The Genomic Scrapheap Challenge; Extracting Relevant Data from Unmapped Whole Genome Sequencing Reads, Including Strain Specific Genomic Segments, in Rats

Robin H. van der Weide, Marieke Simonis, Roel Hermsen, Pim Toonen, Edwin Cuppen, Joep de Ligt

published 08 Aug 2016

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Supervised Learning for Detection of Duplicates in Genomic Sequence Databases

Qingyu Chen, Justin Zobel, Xiuzhen Zhang, Karin Verspoor

published 04 Aug 2016

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RNAseq Analyses Identify Tumor Necrosis Factor-Mediated Inflammation as a Major Abnormality in ALS Spinal Cord

David G. Brohawn, Laura C. O’Brien, James P. Bennett Jr.

published 03 Aug 2016

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