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Sequence analysis

Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

Vincent Ranwez

Genetic Barrier to Direct Acting Antivirals in HCV Sequences Deposited in the European Databank

Dimas Alexandre Kliemann, Cristiane Valle Tovo, [ ... ], John West

A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands

Ikuo Uchiyama, Jacob Albritton, [ ... ], Ichizo Kobayashi

The Genomic Scrapheap Challenge; Extracting Relevant Data from Unmapped Whole Genome Sequencing Reads, Including Strain Specific Genomic Segments, in Rats

Robin H. van der Weide, Marieke Simonis, [ ... ], Joep de Ligt

Supervised Learning for Detection of Duplicates in Genomic Sequence Databases

Qingyu Chen, Justin Zobel, Xiuzhen Zhang, Karin Verspoor

RNAseq Analyses Identify Tumor Necrosis Factor-Mediated Inflammation as a Major Abnormality in ALS Spinal Cord

David G. Brohawn, Laura C. O’Brien, James P. Bennett Jr.

CLIMP: Clustering Motifs via Maximal Cliques with Parallel Computing Design

Shaoqiang Zhang, Yong Chen

B Cell Receptor Activation Predominantly Regulates AKT-mTORC1/2 Substrates Functionally Related to RNA Processing

Dara K. Mohammad, Raja H. Ali, [ ... ], C. I. Edvard Smith

GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

The Complete Genome Sequence of Plodia Interpunctella Granulovirus: Evidence for Horizontal Gene Transfer and Discovery of an Unusual Inhibitor-of-Apoptosis Gene

Robert L. Harrison, Daniel L. Rowley, C. Joel Funk

Prediction and Validation of Transcription Factors Modulating the Expression of Sestrin3 Gene Using an Integrated Computational and Experimental Approach

Rajneesh Srivastava, Yang Zhang, [ ... ], Sarath Chandra Janga

Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers

Stephan Pabinger, Karina Ernst, [ ... ], Andreas Weinhaeusel

The Glutathione-S-Transferase, Cytochrome P450 and Carboxyl/Cholinesterase Gene Superfamilies in Predatory Mite Metaseiulus occidentalis

Ke Wu, Marjorie A. Hoy

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