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Sequence analysis

Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce

Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier

published 30 Mar 2017

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MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool

Bin Zou, JieFu Li, Quan Zhou, Zhe-Xue Quan

published 28 Mar 2017

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ML2Motif—Reliable extraction of discriminative sequence motifs from learning machines

Marina M. -C. Vidovic, Marius Kloft, Klaus-Robert Müller, Nico Görnitz

published 27 Mar 2017

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A genome-wide identification and analysis of the DYW-deaminase genes in the pentatricopeptide repeat gene family in cotton (Gossypium spp.)

Bingbing Zhang, Guoyuan Liu, Xue Li, Liping Guo, Xuexian Zhang, Tingxiang Qi, Hailin Wang, Huini Tang, Xiuqin Qiao, Jinfa Zhang, Chaozhu Xing, Jianyong Wu

published 24 Mar 2017

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Evaluating alignment and variant-calling software for mutation identification in C. elegans by whole-genome sequencing

Harold E. Smith, Sijung Yun

published 23 Mar 2017

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Discriminating between HuR and TTP binding sites using the k-spectrum kernel method

Shweta Bhandare, Debra S. Goldberg, Robin Dowell

published 23 Mar 2017

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The mouse genome displays highly dynamic populations of KRAB-zinc finger protein genes and related genetic units

Annamaria Kauzlaric, Gabriela Ecco, Marco Cassano, Julien Duc, Michael Imbeault, Didier Trono

published 23 Mar 2017

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Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut

Alix Armero, Luc Baudouin, Stéphanie Bocs, Dominique This

published 23 Mar 2017

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IsoSel: Protein Isoform Selector for phylogenetic reconstructions

Héloïse Philippon, Alexia Souvane, Céline Brochier-Armanet, Guy Perrière

published 21 Mar 2017

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Ligand-guided homology modelling of the GABA_B2 subunit of the GABA_B receptor

Thibaud Freyd, Dawid Warszycki, Stefan Mordalski, Andrzej J. Bojarski, Ingebrigt Sylte, Mari Gabrielsen

published 21 Mar 2017

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Evolving Notch polyQ tracts reveal possible solenoid interference elements

Albert J. Erives

published 20 Mar 2017

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Peptidomic and transcriptomic profiling of four distinct spider venoms

Vera Oldrati, Dominique Koua, Pierre-Marie Allard, Nicolas Hulo, Miriam Arrell, Wolfgang Nentwig, Frédérique Lisacek, Jean-Luc Wolfender, Lucia Kuhn-Nentwig, Reto Stöcklin

published 17 Mar 2017

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Multiplex PCR as a tool for the diagnosis of Leishmania spp. kDNA and the gapdh housekeeping gene of mammal hosts

Renata de Cássia-Pires, Myllena de Fátima Alheiros Dias de Melo, Raquel da Hora Barbosa, André Luiz Rodrigues Roque

published 16 Mar 2017

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