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Sequence analysis

An Alignment-Free Algorithm in Comparing the Similarity of Protein Sequences Based on Pseudo-Markov Transition Probabilities among Amino Acids

Yushuang Li, Tian Song, [ ... ], Jialiang Yang

Advantages of an Improved Rhesus Macaque Genome for Evolutionary Analyses

Julien S. Gradnigo, Abhishek Majumdar, Robert B. Norgren Jr, Etsuko N. Moriyama

Complementation of an aglB Mutant of Methanococcus maripaludis with Heterologous Oligosaccharyltransferases

Yan Ding, Helen A. Vrionis, [ ... ], Ken F. Jarrell

IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels

Kota Kasahara, Kengo Kinoshita

Deep, Staged Transcriptomic Resources for the Novel Coleopteran Models Atrachya menetriesi and Callosobruchus maculatus

Matthew A. Benton, Nathan J. Kenny, [ ... ], Jeremy A. Lynch

InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data

Konstantin Okonechnikov, Aki Imai-Matsushima, [ ... ], Fernando Garcia-Alcalde

dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees

Michael J. Wise

Multivalent Interactions of Human Primary Amine Oxidase with the V and C2₂ Domains of Sialic Acid-Binding Immunoglobulin-Like Lectin-9 Regulate Its Binding and Amine Oxidase Activity

Heli Elovaara, Vimal Parkash, [ ... ], Tiina A. Salminen

Morphology and Species Composition of Southern Adriatic Sea Leptocephali Evaluated Using DNA Barcoding

Alessandra Anibaldi, Claudia Benassi Franciosi, [ ... ], Giulia Riccioni

Synonymous Co-Variation across the E1/E2 Gene Junction of Hepatitis C Virus Defines Virion Fitness

Brendan A. Palmer, Liam J. Fanning

Accelerating Information Retrieval from Profile Hidden Markov Model Databases

Ahmad Tamimi, Yaqoub Ashhab, Hashem Tamimi

Sam2bam: High-Performance Framework for NGS Data Preprocessing Tools

Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng

Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome

Kema Malki, Jason W. Shapiro, [ ... ], Catherine Putonti

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