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Sequence analysis

EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determination

Alexey Fomenkov, Zhiyi Sun, Deborah K. Dila, Brian P. Anton, Richard J. Roberts, Elisabeth A. Raleigh

published 27 Jun 2017

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PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes

Akshay Singh, Ajay Kumar Sharma, Nagendra Kumar Singh, Tilak Raj Sharma

published 26 Jun 2017

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Evolution of microRNA in primates

Jey C. McCreight, Sean E. Schneider, Damien B. Wilburn, Willie J. Swanson

published 22 Jun 2017

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IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data

Anouar Boucheham, Vivien Sommard, Farida Zehraoui, Adnane Boualem, Mohamed Batouche, Abdelhafid Bendahmane, David Israeli, Fariza Tahi

published 16 Jun 2017

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Characterization of the regulation of a plant polysaccharide utilization operon and its role in biofilm formation in Bacillus subtilis

Cameron Habib, Yiyang Yu, Kevin Gozzi, Carly Ching, Moshe Shemesh, Yunrong Chai

published 15 Jun 2017

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A TALE-inspired computational screen for proteins that contain approximate tandem repeats

Malgorzata Perycz, Joanna Krwawicz, Matthias Bochtler

published 15 Jun 2017

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Time-calibrated molecular phylogeny of pteropods

Alice K. Burridge, Christine Hörnlein, Arie W. Janssen, Martin Hughes, Stephanie L. Bush, Ferdinand Marlétaz, Rebeca Gasca, Annelies C. Pierrot-Bults, Ellinor Michel, Jonathan A. Todd, Jeremy R. Young, Karen J. Osborn, Steph B. J. Menken, Katja T. C. A. Peijnenburg

published 12 Jun 2017

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Application of environmental DNA to detect an endangered marine skate species in the wild

Kay Weltz, Jeremy M. Lyle, Jennifer Ovenden, Jessica A. T. Morgan, David A. Moreno, Jayson M. Semmens

published 07 Jun 2017

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More than one fungus in the pepper pot: Integrative taxonomy unmasks hidden species within Myriostoma coliforme (Geastraceae, Basidiomycota)

Julieth O. Sousa, Laura M. Suz, Miguel A. García, Donis S. Alfredo, Luana M. Conrado, Paulo Marinho, A. Martyn Ainsworth, Iuri G. Baseia, María P. Martín

published 07 Jun 2017

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Genome-wide analysis of DWD proteins in soybean (Glycine max): Significance of Gm08DWD and GmMYB176 interaction in isoflavonoid biosynthesis

Shaomin Bian, Xuyan Li, Hemanta Mainali, Ling Chen, Sangeeta Dhaubhadel

published 06 Jun 2017

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DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads

Vladimír Boža, Broňa Brejová, Tomáš Vinař

published 05 Jun 2017

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Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing

Alexandra Stoll, Dörte Harpke, Claudia Schütte, Nadine Stefanczyk, Ronny Brandt, Frank R. Blattner, Dietmar Quandt

published 02 Jun 2017

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SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets

Michael G. Becker, Philip L. Walker, Nadège C. Pulgar-Vidal, Mark F. Belmonte

published 02 Jun 2017

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