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Sequence analysis

Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

Description of an extant salamander from the Gulf Coastal Plain of North America: The Reticulated Siren, Siren reticulata

Sean P. Graham, Richard Kline, David A. Steen, Crystal Kelehear

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, [ ... ], Niranjan Nagarajan

Prediction of Metal Ion–Binding Sites in Proteins Using the Fragment Transformation Method

Chih-Hao Lu, Yu-Feng Lin, Jau-Ji Lin, Chin-Sheng Yu

Environmental DNA (eDNA) metabarcoding assays to detect invasive invertebrate species in the Great Lakes

Katy E. Klymus, Nathaniel T. Marshall, Carol A. Stepien

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

Ameet J. Pinto, Lutgarde Raskin

Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au, Jason G. Underwood, Lawrence Lee, Wing Hung Wong

A Unified Model of the GABA_A Receptor Comprising Agonist and Benzodiazepine Binding Sites

Rikke Bergmann, Kristine Kongsbak, [ ... ], Thomas Balle

Molecular Basis of NDM-1, a New Antibiotic Resistance Determinant

Zhongjie Liang, Lianchun Li, [ ... ], Hualiang Jiang

Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling

Felix Krueger, Simon R. Andrews, Cameron S. Osborne

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Shoko Iwai, Thomas Weinmaier, [ ... ], Todd Z. DeSantis

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

Jason S. Cumbie, Jeffrey A. Kimbrel, [ ... ], Jeff H. Chang

A Molecular Phylogeny of the Chalcidoidea (Hymenoptera)

James B. Munro, John M. Heraty, [ ... ], Petr Jansta

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