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Sequence analysis

Genome-wide analysis of DWD proteins in soybean (Glycine max): Significance of Gm08DWD and GmMYB176 interaction in isoflavonoid biosynthesis

Shaomin Bian, Xuyan Li, Hemanta Mainali, Ling Chen, Sangeeta Dhaubhadel

published 06 Jun 2017

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DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads

Vladimír Boža, Broňa Brejová, Tomáš Vinař

published 05 Jun 2017

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Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing

Alexandra Stoll, Dörte Harpke, Claudia Schütte, Nadine Stefanczyk, Ronny Brandt, Frank R. Blattner, Dietmar Quandt

published 02 Jun 2017

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SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets

Michael G. Becker, Philip L. Walker, Nadège C. Pulgar-Vidal, Mark F. Belmonte

published 02 Jun 2017

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Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis

Simon Haile, Pawan Pandoh, Helen McDonald, Richard D. Corbett, Philip Tsao, Heather Kirk, Tina MacLeod, Martin Jones, Steve Bilobram, Denise Brooks, Duane Smailus, Christian Steidl, David W. Scott, Miruna Bala, Martin Hirst, Diane Miller, Richard A. Moore, Andrew J. Mungall, Robin J. Coope, Yussanne Ma, Yongjun Zhao, Rob A. Holt, Steven J. Jones, Marco A. Marra

published 01 Jun 2017

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Identification of TIFY/JAZ family genes in Solanum lycopersicum and their regulation in response to abiotic stresses

Andrea Chini, Walid Ben-Romdhane, Afif Hassairi, Mourad A. M. Aboul-Soud

published 01 Jun 2017

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Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assay

Rosemary S. Turingan, Ludmila Kaplun, Greice Krautz-Peterson, Sarah Norsworthy, Anna Zolotova, Sandeep J. Joseph, Timothy D. Read, Deborah Dean, Eugene Tan, Richard F. Selden

published 31 May 2017

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A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity

Barbara Danneels, Magali Tanghe, Henk-Jan Joosten, Thomas Gundinger, Oliver Spadiut, Ingeborg Stals, Tom Desmet

published 31 May 2017

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Evaluation of three molecular markers for identification of European primary parasitoids of cereal aphids and their hyperparasitoids

Zhengpei Ye, Ines M. G. Vollhardt, Zeljko Tomanovic, Michael Traugott

published 31 May 2017

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Sequence statistics of tertiary structural motifs reflect protein stability

Fan Zheng, Gevorg Grigoryan

published 26 May 2017

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Genome-wide survey of B-box proteins in potato (Solanum tuberosum)—Identification, characterization and expression patterns during diurnal cycle, etiolation and de-etiolation

Urszula Talar, Agnieszka Kiełbowicz-Matuk, Jagoda Czarnecka, Tadeusz Rorat

published 26 May 2017

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Validating regulatory predictions from diverse bacteria with mutant fitness data

Shiori Sagawa, Morgan N. Price, Adam M. Deutschbauer, Adam P. Arkin

published 24 May 2017

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DNA barcoding and LC-MS metabolite profiling of the lichen-forming genus Melanelia: Specimen identification and discrimination focusing on Icelandic taxa

Maonian Xu, Starri Heidmarsson, Margret Thorsteinsdottir, Finnur F. Eiriksson, Sesselja Omarsdottir, Elin S. Olafsdottir

published 24 May 2017

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