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Sequence analysis

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, [ ... ], Forest Rohwer

A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays

Matti Annala, Kirsti Laurila, Harri Lähdesmäki, Matti Nykter

Sex in Cheese: Evidence for Sexuality in the Fungus Penicillium roqueforti

Jeanne Ropars, Joëlle Dupont, [ ... ], Manuela López-Villavicencio

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Identification and Characterization of Circular RNAs As a New Class of Putative Biomarkers in Human Blood

Sebastian Memczak, Panagiotis Papavasileiou, Oliver Peters, Nikolaus Rajewsky

Unusually Long Palindromes Are Abundant in Mitochondrial Control Regions of Insects and Nematodes

K. P. Arunkumar, Javaregowda Nagaraju

Beyond Reasonable Doubt: Evolution from DNA Sequences

W. Timothy J. White, Bojian Zhong, David Penny

Biological Designer Self-Assembling Peptide Nanofiber Scaffolds Significantly Enhance Osteoblast Proliferation, Differentiation and 3-D Migration

Akihiro Horii, Xiumei Wang, Fabrizio Gelain, Shuguang Zhang

Meraculous: De Novo Genome Assembly with Short Paired-End Reads

Jarrod A. Chapman, Isaac Ho, [ ... ], Daniel S. Rokhsar

Distinct Distal Gut Microbiome Diversity and Composition in Healthy Children from Bangladesh and the United States

Audrie Lin, Elisabeth M. Bik, [ ... ], Upinder Singh

Distinctive Gut Microbiota of Honey Bees Assessed Using Deep Sampling from Individual Worker Bees

Nancy A. Moran, Allison K. Hansen, J. Elijah Powell, Zakee L. Sabree

Rapid Plant Identification Using Species- and Group-Specific Primers Targeting Chloroplast DNA

Corinna Wallinger, Anita Juen, [ ... ], Michael Traugott

The Choice of PCR Primers Has Great Impact on Assessments of Bacterial Community Diversity and Dynamics in a Wastewater Treatment Plant

Nils Johan Fredriksson, Malte Hermansson, Britt-Marie Wilén

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