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Sequence analysis

The genomes of Crithidia bombi and C. expoeki, common parasites of bumblebees

Paul Schmid-Hempel, Markus Aebi, Seth Barribeau, Toshihiko Kitajima, Louis du Plessis, Regula Schmid-Hempel, Stefan Zoller

published 05 Jan 2018

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Genetic dissection of QTLs and differentiation analysis of alleles for heading date genes in rice

Hua Zhang, Shuyi Liu, Gao Chen, Xu Liu, Ning Xuan, Yongyi Yang, Wei Liu, Hanfeng Ding, Fangyin Yao

published 03 Jan 2018

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Computational exploration of cis-regulatory modules in rhythmic expression data using the “Exploration of Distinctive CREs and CRMs” (EDCC) and “CRM Network Generator” (CNG) programs

Pavlos Stephanos Bekiaris, Tobias Tekath, Dorothee Staiger, Selahattin Danisman

published 03 Jan 2018

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Evolution of DDB1-binding WD40 (DWD) in the viridiplantae

Rahul Tevatia, George A. Oyler

published 02 Jan 2018

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pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Sven Warris, N. Roshan N. Timal, Marcel Kempenaar, Arne M. Poortinga, Henri van de Geest, Ana L. Varbanescu, Jan-Peter Nap

published 02 Jan 2018

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Phylogenetic inference of Coxiella burnetii by 16S rRNA gene sequencing

Heather P. McLaughlin, Blake Cherney, Janetta R. Hakovirta, Rachael A. Priestley, Andrew Conley, Andrew Carter, David Hodge, Segaran P. Pillai, Linda M. Weigel, Gilbert J. Kersh, David Sue

published 29 Dec 2017

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Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves

Pantelis Katharios, Panos G. Kalatzis, Constantina Kokkari, Elena Sarropoulou, Mathias Middelboe

published 28 Dec 2017

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RNA-Seq differential expression analysis: An extended review and a software tool

Juliana Costa-Silva, Douglas Domingues, Fabricio Martins Lopes

published 21 Dec 2017

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Who’s there? – First morphological and DNA barcoding catalogue of the shallow Hawai’ian sponge fauna

Laura Núñez Pons, Barbara Calcinai, Ruth D. Gates

published 21 Dec 2017

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Genetic and antigenic divergence in the influenza A(H3N2) virus circulating between 2016 and 2017 in Thailand

Nungruthai Suntronwong, Sirapa Klinfueng, Preeyaporn Vichiwattana, Sumeth Korkong, Thanunrat Thongmee, Sompong Vongpunsawad, Yong Poovorawan

published 18 Dec 2017

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Single molecule sequencing of the M13 virus genome without amplification

Luyang Zhao, Liwei Deng, Gailing Li, Huan Jin, Jinsen Cai, Huan Shang, Yan Li, Haomin Wu, Weibin Xu, Lidong Zeng, Renli Zhang, Huan Zhao, Ping Wu, Zhiliang Zhou, Jiao Zheng, Pierre Ezanno, Andrew X. Yang, Qin Yan, Michael W. Deem, Jiankui He

published 18 Dec 2017

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Comparison of sequential multiplex PCR, sequetyping and whole genome sequencing for serotyping of Streptococcus pneumoniae

Florian Mauffrey, Éric Fournier, Walter Demczuk, Irene Martin, Michael Mulvey, Christine Martineau, Simon Lévesque, Sadjia Bekal, Marc-Christian Domingo, Florence Doualla-Bell, Jean Longtin, Brigitte Lefebvre

published 13 Dec 2017

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Bioinformatic analysis reveals new determinants of antigenic 14-3-3 proteins and a novel antifungal strategy

Jenna E. McGowan, Jacqueline Kratch, Saurabh Chattopadhyay, Bina Joe, Heather R. Conti, Ritu Chakravarti

published 12 Dec 2017

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