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Sequence analysis

The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

Abdulkadir Elmas, Xiaodong Wang, Jacqueline M. Dresch

published 05 Oct 2017

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Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis)

Daniela Iamartino, Ezequiel L. Nicolazzi, Curtis P. Van Tassell, James M. Reecy, Eric R. Fritz-Waters, James E. Koltes, Stefano Biffani, Tad S. Sonstegard, Steven G. Schroeder, Paolo Ajmone-Marsan, Riccardo Negrini, Rolando Pasquariello, Paola Ramelli, Angelo Coletta, José F. Garcia, Ahmad Ali, Luigi Ramunno, Gianfranco Cosenza, Denise A. A. de Oliveira, Marcela G. Drummond, Eduardo Bastianetto, Alessandro Davassi, Ali Pirani, Fiona Brew, John L. Williams

published 05 Oct 2017

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Indigenous species barcode database improves the identification of zooplankton

Jianghua Yang, Xiaowei Zhang, Wanwan Zhang, Jingying Sun, Yuwei Xie, Yimin Zhang, G. Allen Burton Jr., Hongxia Yu

published 04 Oct 2017

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On site DNA barcoding by nanopore sequencing

Michele Menegon, Chiara Cantaloni, Ana Rodriguez-Prieto, Cesare Centomo, Ahmed Abdelfattah, Marzia Rossato, Massimo Bernardi, Luciano Xumerle, Simon Loader, Massimo Delledonne

published 04 Oct 2017

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The mitochondrial genome of the plant-pathogenic fungus Stemphylium lycopersici uncovers a dynamic structure due to repetitive and mobile elements

Mario Emilio Ernesto Franco, Silvina Marianela Yanil López, Rocio Medina, César Gustavo Lucentini, Maria Inés Troncozo, Graciela Noemí Pastorino, Mario Carlos Nazareno Saparrat, Pedro Alberto Balatti

published 03 Oct 2017

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Identification and expression of GRAS family genes in maize (Zea mays L.)

Yuyu Guo, Hongyu Wu, Xiang Li, Qi Li, Xinyan Zhao, Xueqing Duan, Yanrong An, Wei Lv, Hailong An

published 28 Sep 2017

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Identification and characterization of two linear epitope motifs in hepatitis E virus ORF2 protein

Heng Wang, Weidong Zhang, Honglang Gu, Wanli Chen, Meng Zeng, Chihai Ji, Ruyue Song, Guihong Zhang

published 28 Sep 2017

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Molecular cloning and characterization of five SmGRAS genes associated with tanshinone biosynthesis in Salvia miltiorrhiza hairy roots

Zhenqing Bai, Pengguo Xia, Ruilin Wang, Jie Jiao, Mei Ru, Jingling Liu, Zongsuo Liang

published 27 Sep 2017

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Genome-wide characterization of GRAS family genes in Medicago truncatula reveals their evolutionary dynamics and functional diversification

Hailing Zhang, Yingping Cao, Chen Shang, Jikai Li, Jianli Wang, Zhenying Wu, Lichao Ma, Tianxiong Qi, Chunxiang Fu, Zetao Bai, Baozhong Hu

published 25 Sep 2017

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A single Danio rerio hars gene encodes both cytoplasmic and mitochondrial histidyl-tRNA synthetases

Ashley L. Waldron, Sara Helms Cahan, Christopher S. Franklyn, Alicia M. Ebert

published 21 Sep 2017

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Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia

Christopher D. Johnston, Chelsey A. Skeete, Alexey Fomenkov, Richard J. Roberts, Susan R. Rittling

published 21 Sep 2017

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Genetic diversity of Entamoeba: Novel ribosomal lineages from cockroaches

Tetsuro Kawano, Mihoko Imada, Pennapa Chamavit, Seiki Kobayashi, Tetsuo Hashimoto, Tomoyoshi Nozaki

published 21 Sep 2017

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Sanger and Next-Generation Sequencing data for characterization of CTL epitopes in archived HIV-1 proviral DNA

Camille Tumiotto, Lionel Riviere, Pantxika Bellecave, Patricia Recordon-Pinson, Alice Vilain-Parce, Gwenda-Line Guidicelli, Hervé Fleury, Provir/Latitude 45 collaborating group

published 21 Sep 2017

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