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Sequence analysis

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

Shea N. Gardner, Barry G. Hall

Comparative Genomics Reveals Insight into Virulence Strategies of Plant Pathogenic Oomycetes

Bishwo N. Adhikari, John P. Hamilton, [ ... ], C. Robin Buell

PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences

Ryuji J. Machida, Nancy Knowlton

SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes

Guénola Drillon, Alessandra Carbone, Gilles Fischer

The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

Meng Yang, Xiaowei Zhang, [ ... ], Jun Yu

Estimation of a Killer Whale (Orcinus orca) Population’s Diet Using Sequencing Analysis of DNA from Feces

Michael J. Ford, Jennifer Hempelmann, [ ... ], Linda K. Park

Blueprint for a High-Performance Biomaterial: Full-Length Spider Dragline Silk Genes

Nadia A. Ayoub, Jessica E. Garb, [ ... ], Cheryl Y. Hayashi

The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

Shannon J. Williamson, Douglas B. Rusch, [ ... ], J. Craig Venter

Rediscovery of an Endemic Vertebrate from the Remote Islas Revillagigedo in the Eastern Pacific Ocean: The Clarión Nightsnake Lost and Found

Daniel G. Mulcahy, Juan E. Martínez-Gómez, [ ... ], George R. Zug

Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge

Tong Zhang, Xu-Xiang Zhang, Lin Ye

Palytoxin Found in Palythoa sp. Zoanthids (Anthozoa, Hexacorallia) Sold in the Home Aquarium Trade

Jonathan R. Deeds, Sara M. Handy, Kevin D. White, James D. Reimer

The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

Martina Proell, Stefan J. Riedl, [ ... ], Robert Schwarzenbacher

The Phylogenetic Diversity of Metagenomes

Steven W. Kembel, Jonathan A. Eisen, Katherine S. Pollard, Jessica L. Green

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