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Sequence analysis

Complete Genes May Pass from Food to Human Blood

Sándor Spisák, Norbert Solymosi, [ ... ], István Csabai

RNA-Seq differential expression analysis: An extended review and a software tool

Juliana Costa-Silva, Douglas Domingues, Fabricio Martins Lopes

Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d’Ivoire

Christiane Essoh, Libera Latino, [ ... ], Christine Pourcel

Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens

Ramya Srinivasan, Ulas Karaoz, [ ... ], Susan V. Lynch

Protein 3D Structure Computed from Evolutionary Sequence Variation

Debora S. Marks, Lucy J. Colwell, [ ... ], Chris Sander

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

Yong Wang, Pei-Yuan Qian

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Chengwei Luo, Despina Tsementzi, [ ... ], Konstantinos T. Konstantinidis

Assessment and verification of commercially available pressure cookers for laboratory sterilization

Vaille A. Swenson, Amanda D. Stacy, [ ... ], Patrick Videau

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Cristian Del Fabbro, Simone Scalabrin, Michele Morgante, Federico M. Giorgi

Optimal Eukaryotic 18S and Universal 16S/18S Ribosomal RNA Primers and Their Application in a Study of Symbiosis

Yong Wang, Ren Mao Tian, [ ... ], Pei-Yuan Qian

Ubiquity and Diversity of Human-Associated Demodex Mites

Megan S. Thoemmes, Daniel J. Fergus, [ ... ], Robert R. Dunn

Predicting the Functional Effect of Amino Acid Substitutions and Indels

Yongwook Choi, Gregory E. Sims, [ ... ], Agnes P. Chan

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