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RNA folding

Short tandem repeat variants are possibly associated with RNA secondary structure and gene expression

Nick Kinney, Dikshya Pathak, Emma Evans, Paola Arias

published 18 Jun 2025

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Practical diets for California yellowtail, Seriola dorsalis: Use of advanced soybean meal products on growth performance, body composition, intestinal morphology, and immune gene expression

Abdulmalik A. Oladipupo, Kevin R. Stuart, Timothy J. Bruce, Mark A. Drawbridge, D. Allen Davis

published 07 Jun 2024

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Transcriptomic and proteomic analysis of the virulence inducing effect of ciprofloxacin on enterohemorrhagic Escherichia coli

Anne Cecilie Riihonen Kijewski, Ingun Lund Witsø, Arvind Y. M. Sundaram, Ola Brønstad Brynildsrud, Kristin Pettersen, Eirik Byrkjeflot Anonsen, Jan Haug Anonsen, Marina Elisabeth Aspholm

published 24 May 2024

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De novo prediction of RNA 3D structures with deep generative models

Julius Ramakers, Christopher Frederik Blum, Sabrina König, Stefan Harmeling, Markus Kollmann

published 15 Feb 2024

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Comparative analysis of RNA secondary structure accuracy on predicted RNA 3D models

Mandar Kulkarni, Jayaraman Thangappan, Indrajit Deb, Sangwook Wu

published 01 Sep 2023

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Direct detection of polioviruses using a recombinant poliovirus receptor

Nancy Gerloff, Mark Mandelbaum, Hong Pang, Nikail Collins, Brittani Brown, Hong Sun, Chelsea Harrington, Jessica Hecker, Chadi Agha, Cara C. Burns, Everardo Vega

published 02 Nov 2021

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Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli

Lea K. Drogalis, Robert T. Batey

published 01 Dec 2020

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Unraveling the molecular pathobiology of vocal fold systemic dehydration using an in vivo rabbit model

Naila Cannes do Nascimento, Andrea P. dos Santos, M. Preeti Sivasankar, Abigail Cox

published 31 Jul 2020

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Conformation and mechanical property of rpoS mRNA inhibitory stem studied by optical tweezers and X-ray scattering

Xinyao Hu, Xuanling Li, Lingna Yang, Yilin Zhu, Yunyu Shi, Yinmei Li, Haowei Wang, Qingguo Gong

published 26 Sep 2019

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Computational identification of key genes that may regulate gene expression reprogramming in Alzheimer’s patients

Judith A. Potashkin, Virginie Bottero, Jose A. Santiago, James P. Quinn

published 23 Sep 2019

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Optimal use of statistical methods to validate reference gene stability in longitudinal studies

Venkat Krishnan Sundaram, Nirmal Kumar Sampathkumar, Charbel Massaad, Julien Grenier

published 23 Jul 2019

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RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression

Collin A. O’Leary, Ryan J. Andrews, Van S. Tompkins, Jonathan L. Chen, Jessica L. Childs-Disney, Matthew D. Disney, Walter N. Moss

published 17 Jun 2019

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Structural prediction of RNA switches using conditional base-pair probabilities

Amirhossein Manzourolajdad, John L. Spouge

published 12 Jun 2019

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