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RNA folding

Genome-Wide Analysis of Selective Constraints on High Stability Regions of mRNA Reveals Multiple Compensatory Mutations in Escherichia coli

Yuanhui Mao, Qian Li, [ ... ], Shiheng Tao

Predicting Helical Topologies in RNA Junctions as Tree Graphs

Christian Laing, Segun Jung, [ ... ], Tamar Schlick

Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures

Samuel Bleckley, Jonathan W. Stone, Susan J. Schroeder

Coarse-Grained Prediction of RNA Loop Structures

Liang Liu, Shi-Jie Chen

Computational Study of Unfolding and Regulation Mechanism of preQ₁ Riboswitches

Zhou Gong, Yunjie Zhao, Changjun Chen, Yi Xiao

The 3′ Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin

Walter N. Moss, Lumbini I. Dela-Moss, [ ... ], Douglas H. Turner

RNA Folding and Catalysis Mediated by Iron (II)

Shreyas S. Athavale, Anton S. Petrov, [ ... ], Loren Dean Williams

Solexa Sequencing Identification of Conserved and Novel microRNAs in Backfat of Large White and Chinese Meishan Pigs

Chen Chen, Bing Deng, [ ... ], Siwen Jiang

Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks

Jacobo Aguirre, Javier M. Buldú, Michael Stich, Susanna C. Manrubia

ENCODE Tiling Array Analysis Identifies Differentially Expressed Annotated and Novel 5′ Capped RNAs in Hepatitis C Infected Liver

Milan E. Folkers, Don A. Delker, [ ... ], Curt H. Hagedorn

Computing the Partition Function for Kinetically Trapped RNA Secondary Structures

William A. Lorenz, Peter Clote

Profile of Acute Infectious Markers in Sporadic Hepatitis E

Shoujie Huang, Xuefeng Zhang, [ ... ], Ningshao Xia

Tumor Necrosis Factor-α Regulates Distinct Molecular Pathways and Gene Networks in Cultured Skeletal Muscle Cells

Shephali Bhatnagar, Siva K. Panguluri, [ ... ], Ashok Kumar

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