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RNA folding

TBI Server: A Web Server for Predicting Ion Effects in RNA Folding

Yuhong Zhu, Zhaojian He, Shi-Jie Chen

A Parallel Implementation of the Wuchty Algorithm with Additional Experimental Filters to More Thoroughly Explore RNA Conformational Space

Jonathan W. Stone, Samuel Bleckley, Sean Lavelle, Susan J. Schroeder

On the Normalization of the Minimum Free Energy of RNAs by Sequence Length

Edoardo Trotta

Cerebral Artery Alpha-1 AR Subtypes: High Altitude Long-Term Acclimatization Responses

Ravi Goyal, Dipali Goyal, [ ... ], Lawrence D. Longo

Revisiting Robustness and Evolvability: Evolution in Weighted Genotype Spaces

Raghavendran Partha, Karthik Raman

Vfold: A Web Server for RNA Structure and Folding Thermodynamics Prediction

Xiaojun Xu, Peinan Zhao, Shi-Jie Chen

G-Quadruplex Structures Formed by Expanded Hexanucleotide Repeat RNA and DNA from the Neurodegenerative Disease-Linked C9orf72 Gene Efficiently Sequester and Activate Heme

Jason C. Grigg, Nisreen Shumayrikh, Dipankar Sen

The Long Noncoding RNA Expression Profile of Hepatocellular Carcinoma Identified by Microarray Analysis

Juanjuan Zhu, Shanshan Liu, [ ... ], Hanjiang Fu

Patterns of Recombination in HIV-1M Are Influenced by Selection Disfavouring the Survival of Recombinants with Disrupted Genomic RNA and Protein Structures

Michael Golden, Brejnev M. Muhire, Yves Semegni, Darren P. Martin

RNAthermsw: Direct Temperature Simulations for Predicting the Location of RNA Thermometers

Alexander Churkin, Assaf Avihoo, Michal Shapira, Danny Barash

Helix Capping in RNA Structure

Jung C. Lee, Robin R. Gutell

Mapping the Kinetic Barriers of a Large RNA Molecule's Folding Landscape

Jörg C. Schlatterer, Joshua S. Martin, Alain Laederach, Michael Brenowitz

Transcriptional Defect of an Inherited NKX2-5 Haplotype Comprising a SNP, a Nonsynonymous and a Synonymous Mutation, Associated with Human Congenital Heart Disease

Stella Marie Reamon-Buettner, Evelyn Sattlegger, [ ... ], Jürgen Borlak

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