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RNA alignment

Assessing the accuracy of blood RNA profiles to identify patients with post-concussion syndrome: A pilot study in a military patient population

Jimmaline J. Hardy, Scott. R. Mooney, [ ... ], Robert Meller

Mutational Patterns in RNA Secondary Structure Evolution Examined in Three RNA Families

Anuj Srivastava, Liming Cai, Jan Mrázek, Russell L. Malmberg

Identification of the Porcine XIST Gene and Its Differential CpG Methylation Status in Male and Female Pig Cells

Jae Yeon Hwang, Eun Bae Kim, Hakhyun Ka, Chang-Kyu Lee

Comparison of whole transcriptome sequencing of fresh, frozen, and formalin-fixed, paraffin-embedded cardiac tissue

Stine Bøttcher Jacobsen, Jacob Tfelt-Hansen, [ ... ], Niels Morling

RNA variant identification discrepancy among splice-aware alignment algorithms

Ji Hyung Hong, Yoon Ho Ko, Keunsoo Kang

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Corinna Theis, Craig L. Zirbel, [ ... ], Jan Gorodkin

RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment

Amir H. Bayegan, Peter Clote

Deep Sequencing Identification of Novel Glucocorticoid-Responsive miRNAs in Apoptotic Primary Lymphocytes

Lindsay K. Smith, Arpit Tandon, [ ... ], John A. Cidlowski

HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages

Valentina Vongrad, Jochen Imig, [ ... ], Karin J. Metzner

aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events

Thomas Harrison, Jaime Ruiz, [ ... ], Christina Boucher

CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking

Lei Hua, Yang Song, [ ... ], Tamar Schlick

Crystal structure of an RNA/DNA strand exchange junction

Joshua C. Cofsky, Gavin J. Knott, Christine L. Gee, Jennifer A. Doudna

Predicting A-to-I RNA Editing by Feature Selection and Random Forest

Yang Shu, Ning Zhang, [ ... ], Yu-Dong Cai

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