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RNA alignment

Deep Sequencing Identification of Novel Glucocorticoid-Responsive miRNAs in Apoptotic Primary Lymphocytes

Lindsay K. Smith, Arpit Tandon, Ruchir R. Shah, Deepak Mav, Alyson B. Scoltock, John A. Cidlowski

published 24 Oct 2013

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Identification of the Porcine XIST Gene and Its Differential CpG Methylation Status in Male and Female Pig Cells

Jae Yeon Hwang, Eun Bae Kim, Hakhyun Ka, Chang-Kyu Lee

published 09 Sep 2013

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Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants

Yusuke Yagi, Shimpei Hayashi, Keiko Kobayashi, Takashi Hirayama, Takahiro Nakamura

published 05 Mar 2013

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Phylogeny of the Archiborborinae (Diptera: Sphaeroceridae) Based on Combined Morphological and Molecular Analysis

Joel H. Kits, Stephen A. Marshall, Jeffrey H. Skevington

published 18 Jan 2013

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A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

Robert Lindner, Caroline C. Friedel

published 26 Dec 2012

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mRNA-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene Expression and Pathways Found in Prostate Cancer

Gordon M. Cann, Zulfiqar G. Gulzar, Samantha Cooper, Robin Li, Shujun Luo, Mai Tat, Sarah Stuart, Gary Schroth, Sandhya Srinivas, Mostafa Ronaghi, James D. Brooks, AmirAli H. Talasaz

published 07 Nov 2012

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A Novel Computational Strategy to Identify A-to-I RNA Editing Sites by RNA-Seq Data: De Novo Detection in Human Spinal Cord Tissue

Ernesto Picardi, Angela Gallo, Federica Galeano, Sara Tomaselli, Graziano Pesole

published 05 Sep 2012

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Mating of the Stichotrichous Ciliate Oxytricha trifallax Induces Production of a Class of 27 nt Small RNAs Derived from the Parental Macronucleus

Alan M. Zahler, Zachary T. Neeb, Athena Lin, Sol Katzman

published 10 Aug 2012

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De-Novo Transcriptome Sequencing of a Normalized cDNA Pool from Influenza Infected Ferrets

Jeremy V. Camp, Thomas L. Svensson, Alexis McBrayer, Colleen B. Jonsson, Peter Liljeström, Carl E. Bruder

published 11 May 2012

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Canonical A-to-I and C-to-U RNA Editing Is Enriched at 3′UTRs and microRNA Target Sites in Multiple Mouse Tissues

Tongjun Gu, Frank W. Buaas, Allen K. Simons, Cheryl L. Ackert-Bicknell, Robert E. Braun, Matthew A. Hibbs

published 20 Mar 2012

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Phylo: A Citizen Science Approach for Improving Multiple Sequence Alignment

Alexander Kawrykow, Gary Roumanis, Alfred Kam, Daniel Kwak, Clarence Leung, Chu Wu, Eleyine Zarour, Phylo players , Luis Sarmenta, Mathieu Blanchette, Jérôme Waldispühl

published 07 Mar 2012

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RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

published 21 Nov 2011

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Mutational Patterns in RNA Secondary Structure Evolution Examined in Three RNA Families

Anuj Srivastava, Liming Cai, Jan Mrázek, Russell L. Malmberg

published 17 Jun 2011

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