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RNA alignment

Evaluation of Alignment Algorithms for Discovery and Identification of Pathogens Using RNA-Seq

Ivan Borozan, Stuart N. Watt, Vincent Ferretti

The Gonococcal Transcriptome during Infection of the Lower Genital Tract in Women

Ryan McClure, Kathleen Nudel, [ ... ], Caroline A. Genco

A Novel Computational Strategy to Identify A-to-I RNA Editing Sites by RNA-Seq Data: De Novo Detection in Human Spinal Cord Tissue

Ernesto Picardi, Angela Gallo, [ ... ], Graziano Pesole

Generalized Centroid Estimators in Bioinformatics

Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai

Using Deep RNA Sequencing for the Structural Annotation of the Laccaria Bicolor Mycorrhizal Transcriptome

Peter E. Larsen, Geetika Trivedi, [ ... ], Frank R. Collart

Viral IRES Prediction System - a Web Server for Prediction of the IRES Secondary Structure In Silico

Jun-Jie Hong, Tzong-Yuan Wu, Tsair-Yuan Chang, Chung-Yung Chen

Molecular Archaeology of Flaviviridae Untranslated Regions: Duplicated RNA Structures in the Replication Enhancer of Flaviviruses and Pestiviruses Emerged via Convergent Evolution

Dmitri J. Gritsun, Ian M. Jones, Ernest A. Gould, Tamara S. Gritsun

Novel Exons and Splice Variants in the Human Antibody Heavy Chain Identified by Single Cell and Single Molecule Sequencing

Christopher Vollmers, Lolita Penland, Jad N. Kanbar, Stephen R. Quake

JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

Yaron S. Butterfield, Maayan Kreitzman, [ ... ], İnanç Birol

RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition

Shunfu Mao, Lior Pachter, David Tse, Sreeram Kannan

Conserved Secondary Structures in Aspergillus

Abigail Manson McGuire, James E. Galagan

De-Novo Transcriptome Sequencing of a Normalized cDNA Pool from Influenza Infected Ferrets

Jeremy V. Camp, Thomas L. Svensson, [ ... ], Carl E. Bruder

Phylogeny of the Archiborborinae (Diptera: Sphaeroceridae) Based on Combined Morphological and Molecular Analysis

Joel H. Kits, Stephen A. Marshall, Jeffrey H. Skevington

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