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RNA alignment

miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy

Alexander S. Baras, Christopher J. Mitchell, [ ... ], Marc K. Halushka

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Corinna Theis, Craig L. Zirbel, [ ... ], Jan Gorodkin

The Gonococcal Transcriptome during Infection of the Lower Genital Tract in Women

Ryan McClure, Kathleen Nudel, [ ... ], Caroline A. Genco

HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages

Valentina Vongrad, Jochen Imig, [ ... ], Karin J. Metzner

Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data

David L. A. Wood, Katia Nones, [ ... ], Sean M. Grimmond

Novel Exons and Splice Variants in the Human Antibody Heavy Chain Identified by Single Cell and Single Molecule Sequencing

Christopher Vollmers, Lolita Penland, Jad N. Kanbar, Stephen R. Quake

IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, [ ... ], Nicholas Chia

Predicting A-to-I RNA Editing by Feature Selection and Random Forest

Yang Shu, Ning Zhang, [ ... ], Yu-Dong Cai

JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

Yaron S. Butterfield, Maayan Kreitzman, [ ... ], İnanç Birol

Massively Parallel Sequencing of Human Urinary Exosome/Microvesicle RNA Reveals a Predominance of Non-Coding RNA

Kevin C. Miranda, Daniel T. Bond, [ ... ], Leileata M. Russo

Molecular Archaeology of Flaviviridae Untranslated Regions: Duplicated RNA Structures in the Replication Enhancer of Flaviviruses and Pestiviruses Emerged via Convergent Evolution

Dmitri J. Gritsun, Ian M. Jones, Ernest A. Gould, Tamara S. Gritsun

Viral IRES Prediction System - a Web Server for Prediction of the IRES Secondary Structure In Silico

Jun-Jie Hong, Tzong-Yuan Wu, Tsair-Yuan Chang, Chung-Yung Chen

Evaluation of Alignment Algorithms for Discovery and Identification of Pathogens Using RNA-Seq

Ivan Borozan, Stuart N. Watt, Vincent Ferretti

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