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RNA alignment

Phylo: A Citizen Science Approach for Improving Multiple Sequence Alignment

Alexander Kawrykow, Gary Roumanis, [ ... ], Jérôme Waldispühl

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

Ago2 Immunoprecipitation Identifies Predicted MicroRNAs in Human Embryonic Stem Cells and Neural Precursors

Loyal A. Goff, Jonathan Davila, [ ... ], Ronald P. Hart

A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

Robert Lindner, Caroline C. Friedel

mRNA-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene Expression and Pathways Found in Prostate Cancer

Gordon M. Cann, Zulfiqar G. Gulzar, [ ... ], AmirAli H. Talasaz

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

Andrew M. Smith, Miten Jain, [ ... ], Mark Akeson

Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants

Yusuke Yagi, Shimpei Hayashi, [ ... ], Takahiro Nakamura

IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, [ ... ], Nicholas Chia

Massively Parallel Sequencing of Human Urinary Exosome/Microvesicle RNA Reveals a Predominance of Non-Coding RNA

Kevin C. Miranda, Daniel T. Bond, [ ... ], Leileata M. Russo

miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy

Alexander S. Baras, Christopher J. Mitchell, [ ... ], Marc K. Halushka

Mating of the Stichotrichous Ciliate Oxytricha trifallax Induces Production of a Class of 27 nt Small RNAs Derived from the Parental Macronucleus

Alan M. Zahler, Zachary T. Neeb, Athena Lin, Sol Katzman

Canonical A-to-I and C-to-U RNA Editing Is Enriched at 3′UTRs and microRNA Target Sites in Multiple Mouse Tissues

Tongjun Gu, Frank W. Buaas, [ ... ], Matthew A. Hibbs

Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data

David L. A. Wood, Katia Nones, [ ... ], Sean M. Grimmond

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