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RNA alignment

RNA degradation patterns in cardiac tissues kept at different time intervals and temperatures before RNA sequencing

Stine Bøttcher Jacobsen, Jacob Tfelt-Hansen, Morten Holdgaard Smerup, Niels Morling, Jeppe Dyrberg Andersen

published 15 May 2025

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Aligned membranes regulate wound healing via MMP12 secreted by macrophages

Hongli Ma, Limin Gong, Xi Yang, Hui Fang, Jiacai He, Chenbing Wang

published 15 Jan 2025

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Next-generation sequencing protocol of hematopoietic stem cells (HSCs). Step-by-step overview and troubleshooting guide

Justyna Jarczak, Kamila Bujko, Katarzyna Brzeźniakiewicz-Janus, Mariusz Ratajczak, Magdalena Kucia

published 09 Jan 2025

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Comparison of whole transcriptome sequencing of fresh, frozen, and formalin-fixed, paraffin-embedded cardiac tissue

Stine Bøttcher Jacobsen, Jacob Tfelt-Hansen, Morten Holdgaard Smerup, Jeppe Dyrberg Andersen, Niels Morling

published 29 Mar 2023

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Crystal structure of an RNA/DNA strand exchange junction

Joshua C. Cofsky, Gavin J. Knott, Christine L. Gee, Jennifer A. Doudna

published 18 Apr 2022

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RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition

Shunfu Mao, Lior Pachter, David Tse, Sreeram Kannan

published 02 Jun 2020

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The L motifs of two moss pentatricopeptide repeat proteins are involved in RNA editing but predominantly not in RNA recognition

Takuya Matsuda, Mamoru Sugita, Mizuho Ichinose

published 29 Apr 2020

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RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment

Amir H. Bayegan, Peter Clote

published 24 Jan 2020

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Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

Andrew M. Smith, Miten Jain, Logan Mulroney, Daniel R. Garalde, Mark Akeson

published 16 May 2019

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RNA variant identification discrepancy among splice-aware alignment algorithms

Ji Hyung Hong, Yoon Ho Ko, Keunsoo Kang

published 02 Aug 2018

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Assessing the accuracy of blood RNA profiles to identify patients with post-concussion syndrome: A pilot study in a military patient population

Jimmaline J. Hardy, Scott. R. Mooney, Andrea. N. Pearson, Dawn McGuire, Daniel. J. Correa, Roger P. Simon, Robert Meller

published 01 Sep 2017

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aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events

Thomas Harrison, Jaime Ruiz, Daniel B. Sloan, Asa Ben-Hur, Christina Boucher

published 25 Aug 2016

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CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking

Lei Hua, Yang Song, Namhee Kim, Christian Laing, Jason T. L. Wang, Tamar Schlick

published 20 Jan 2016

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