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Riboswitches

Inhibition of xpt Guanine Riboswitch by a synthetic nucleoside analog

Swapan S. Jain, Emily C. McLaughlin, Gabriel G. Perron, Mallikarjunachari Uppuladinne, Seoyoung Kim, Katherina Gindinova, Silvie H. Lundgren, Liad Elmelech, Uddhavesh Sonavane, Rajendra Joshi, Korrapati Narasimhulu

published 05 May 2025

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Identification of potential riboswitch elements in Homo sapiens mRNA 5’UTR sequences using positive-unlabeled machine learning

William S Raymond, Jacob DeRoo, Brian Munsky

published 24 Apr 2025

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Antisense-acting riboswitches: A poorly characterized yet important model of transcriptional regulation in prokaryotic organisms

Mariela Serrano-Gutiérrez, Enrique Merino

published 21 Feb 2023

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Translational gene expression control in Chlamydia trachomatis

Nicole A. Grieshaber, Travis J. Chiarelli, Cody R. Appa, Grace Neiswanger, Kristina Peretti, Scott S. Grieshaber

published 27 Jan 2022

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Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli

Lea K. Drogalis, Robert T. Batey

published 01 Dec 2020

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Modeling a synthetic aptamer-based riboswitch biosensor sensitive to low hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) concentrations

Michael L. Mayo, Jed O. Eberly, Fiona H. Crocker, Karl J. Indest

published 30 Nov 2020

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Identification and characterisation of thiamine pyrophosphate (TPP) riboswitch in Elaeis guineensis

Atiqah Subki, Chai Ling Ho, Nur Farhah Nabihan Ismail, Aisamuddin Ardi Zainal Abidin, Zetty Norhana Balia Yusof

published 29 Jul 2020

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Structural prediction of RNA switches using conditional base-pair probabilities

Amirhossein Manzourolajdad, John L. Spouge

published 12 Jun 2019

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Extracting information from RNA SHAPE data: Kalman filtering approach

Sana Vaziri, Patrice Koehl, Sharon Aviran

published 21 Nov 2018

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RiboFACSeq: A new method for investigating metabolic and transport pathways in bacterial cells by combining a riboswitch-based sensor, fluorescence-activated cell sorting and next-generation sequencing

Zohaib Ghazi, Shahrzad Jahanshahi, Yingfu Li

published 06 Dec 2017

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Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria

Sumit Mukherjee, Danny Barash, Supratim Sengupta

published 05 Sep 2017

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Ligand-mediated and tertiary interactions cooperatively stabilize the P1 region in the guanine-sensing riboswitch

Christian A. Hanke, Holger Gohlke

published 22 Jun 2017

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The Conserved Dcw Gene Cluster of R. sphaeroides Is Preceded by an Uncommonly Extended 5’ Leader Featuring the sRNA UpsM

Lennart Weber, Clemens Thoelken, Marcel Volk, Bernhard Remes, Marcus Lechner, Gabriele Klug

published 01 Nov 2016

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