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Pseudoknots

Computational Study of Unfolding and Regulation Mechanism of preQ₁ Riboswitches

Zhou Gong, Yunjie Zhao, Changjun Chen, Yi Xiao

Inhibition of Hepatitis C Virus in Mice by a Small Interfering RNA Targeting a Highly Conserved Sequence in Viral IRES Pseudoknot

Jae-Su Moon, Seung-Hoon Lee, [ ... ], Jong-Won Oh

Mutations Designed by Ensemble Defect to Misfold Conserved RNA Structures of Influenza A Segments 7 and 8 Affect Splicing and Attenuate Viral Replication in Cell Culture

Tian Jiang, Aitor Nogales, [ ... ], Douglas H Turner

Free Energy Landscape and Multiple Folding Pathways of an H-Type RNA Pseudoknot

Yunqiang Bian, Jian Zhang, [ ... ], Wei Wang

Conformational Features of Topologically Classified RNA Secondary Structures

Jimmy Ka Ho Chiu, Yi-Ping Phoebe Chen

Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic

Amirhossein Manzourolajdad, Mileidy Gonzalez, John L. Spouge

Rab-GDI Complex Dissociation Factor Expressed through Translational Frameshifting in Filamentous Ascomycetes

Fabienne Malagnac, Céline Fabret, [ ... ], Philippe Silar

jViz.RNA 4.0—Visualizing pseudoknots and RNA editing employing compressed tree graphs

Boris Shabash, Kay C. Wiese

TBI Server: A Web Server for Predicting Ion Effects in RNA Folding

Yuhong Zhu, Zhaojian He, Shi-Jie Chen

Comparative analysis of RNA secondary structure accuracy on predicted RNA 3D models

Mandar Kulkarni, Jayaraman Thangappan, Indrajit Deb, Sangwook Wu

Possible involvement of three-stemmed pseudoknots in regulating translational initiation in human mRNAs

Xiaolan Huang, Zhihua Du

A divide-and-conquer approach based on deep learning for long RNA secondary structure prediction: Focus on pseudoknots identification

Loïc Omnes, Eric Angel, [ ... ], Fariza Tahi

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