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Protein structure databases

Combining Structural Modeling with Ensemble Machine Learning to Accurately Predict Protein Fold Stability and Binding Affinity Effects upon Mutation

Niklas Berliner, Joan Teyra, [ ... ], Philip M. Kim

The “CPC Clip Motif”: A Conserved Structural Signature for Heparin-Binding Proteins

Marc Torrent, M. Victòria Nogués, David Andreu, Ester Boix

Novel Inhibitor Design for Hemagglutinin against H1N1 Influenza Virus by Core Hopping Method

Xiao-Bo Li, Shu-Qing Wang, [ ... ], Kuo-Chen Chou

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi

Text Mining Improves Prediction of Protein Functional Sites

Karin M. Verspoor, Judith D. Cohn, Komandur E. Ravikumar, Michael E. Wall

Naegleria fowleri: Protein structures to facilitate drug discovery for the deadly, pathogenic free-living amoeba

Logan Tillery, Kayleigh Barrett, [ ... ], Wesley C. Van Voorhis

Alignment of Helical Membrane Protein Sequences Using AlignMe

Marcus Stamm, René Staritzbichler, Kamil Khafizov, Lucy R. Forrest

Towards Alignment Independent Quantitative Assessment of Homology Detection

Avihay Apatoff, Eddo Kim, Yossef Kliger

Atomic Interaction Networks in the Core of Protein Domains and Their Native Folds

Venkataramanan Soundararajan, Rahul Raman, [ ... ], Ram Sasisekharan

New Binding Site Conformations of the Dengue Virus NS3 Protease Accessed by Molecular Dynamics Simulation

Hugo de Almeida, Izabela M. D. Bastos, [ ... ], Jaime M. Santana

Peptide Bond Distortions from Planarity: New Insights from Quantum Mechanical Calculations and Peptide/Protein Crystal Structures

Roberto Improta, Luigi Vitagliano, Luciana Esposito

Two Structural Motifs within Canonical EF-Hand Calcium-Binding Domains Identify Five Different Classes of Calcium Buffers and Sensors

Konstantin Denessiouk, Sergei Permyakov, [ ... ], Mark S. Johnson

Anchored Design of Protein-Protein Interfaces

Steven M. Lewis, Brian A. Kuhlman

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