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Protein structure databases

Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Yoojin Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum

published 22 Oct 2010

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Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chia-Han Chu, Wei-Cheng Lo, Hsin-Wei Wang, Yen-Chu Hsu, Jenn-Kang Hwang, Ping-Chiang Lyu, Tun-Wen Pai, Chuan Yi Tang

published 14 Oct 2010

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Sub-Nanoscale Surface Ruggedness Provides a Water-Tight Seal for Exposed Regions in Soluble Protein Structure

Erica Schulz, Marisa Frechero, Gustavo Appignanesi, Ariel Fernández

published 17 Sep 2010

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Molecular Modeling of Mechanosensory Ion Channel Structural and Functional Features

Renate Gessmann, Nikos Kourtis, Kyriacos Petratos, Nektarios Tavernarakis

published 16 Sep 2010

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A Score of the Ability of a Three-Dimensional Protein Model to Retrieve Its Own Sequence as a Quantitative Measure of Its Quality and Appropriateness

León P. Martínez-Castilla, Rogelio Rodríguez-Sotres

published 07 Sep 2010

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A Structure-Based Approach for Mapping Adverse Drug Reactions to the Perturbation of Underlying Biological Pathways

Izhar Wallach, Navdeep Jaitly, Ryan Lilien

published 23 Aug 2010

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Superpose3D: A Local Structural Comparison Program That Allows for User-Defined Structure Representations

Pier Federico Gherardini, Gabriele Ausiello, Manuela Helmer-Citterich

published 05 Aug 2010

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Hydrophilicity Matching – A Potential Prerequisite for the Formation of Protein-Protein Complexes in the Cell

Mario Hlevnjak, Gordan Zitkovic, Bojan Zagrovic

published 17 Jun 2010

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FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues

Ashish V. Tendulkar, Martin Krallinger, Victor de la Torre, Gonzalo López, Pramod P. Wangikar, Alfonso Valencia

published 18 Mar 2010

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Atomic Analysis of Protein-Protein Interfaces with Known Inhibitors: The 2P2I Database

Raphaël Bourgeas, Marie-Jeanne Basse, Xavier Morelli, Philippe Roche

published 09 Mar 2010

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Atomic Interaction Networks in the Core of Protein Domains and Their Native Folds

Venkataramanan Soundararajan, Rahul Raman, S. Raguram, V. Sasisekharan, Ram Sasisekharan

published 23 Feb 2010

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Comprehensive Identification and Modified-Site Mapping of S-Nitrosylated Targets in Prostate Epithelial Cells

Ying Wai Lam, Yong Yuan, Jared Isaac, C. V. Suresh Babu, Jarek Meller, Shuk-Mei Ho

published 05 Feb 2010

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Structural and Functional Roles of Coevolved Sites in Proteins

Saikat Chakrabarti, Anna R. Panchenko

published 06 Jan 2010

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