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Protein structure databases

The Combined Effects of Amino Acid Substitutions and Indels on the Evolution of Structure within Protein Families

Zheng Zhang, Yuxiao Wang, Lushan Wang, Peiji Gao

published 13 Dec 2010

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Symmetric Key Structural Residues in Symmetric Proteins with Beta-Trefoil Fold

Jianhui Feng, Mingfeng Li, Yanzhao Huang, Yi Xiao

published 30 Nov 2010

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Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Thomas Hamelryck, Mikael Borg, Martin Paluszewski, Jonas Paulsen, Jes Frellsen, Christian Andreetta, Wouter Boomsma, Sandro Bottaro, Jesper Ferkinghoff-Borg

published 10 Nov 2010

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Structural Studies of the Tandem Tudor Domains of Fragile X Mental Retardation Related Proteins FXR1 and FXR2

Melanie A. Adams-Cioaba, Yahong Guo, ChuanBing Bian, Maria F. Amaya, Robert Lam, Gregory A. Wasney, Masoud Vedadi, Chao Xu, Jinrong Min

published 02 Nov 2010

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A Novel Side-Chain Orientation Dependent Potential Derived from Random-Walk Reference State for Protein Fold Selection and Structure Prediction

Jian Zhang, Yang Zhang

published 27 Oct 2010

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Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Yoojin Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum

published 22 Oct 2010

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Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chia-Han Chu, Wei-Cheng Lo, Hsin-Wei Wang, Yen-Chu Hsu, Jenn-Kang Hwang, Ping-Chiang Lyu, Tun-Wen Pai, Chuan Yi Tang

published 14 Oct 2010

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Sub-Nanoscale Surface Ruggedness Provides a Water-Tight Seal for Exposed Regions in Soluble Protein Structure

Erica Schulz, Marisa Frechero, Gustavo Appignanesi, Ariel Fernández

published 17 Sep 2010

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Molecular Modeling of Mechanosensory Ion Channel Structural and Functional Features

Renate Gessmann, Nikos Kourtis, Kyriacos Petratos, Nektarios Tavernarakis

published 16 Sep 2010

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A Score of the Ability of a Three-Dimensional Protein Model to Retrieve Its Own Sequence as a Quantitative Measure of Its Quality and Appropriateness

León P. Martínez-Castilla, Rogelio Rodríguez-Sotres

published 07 Sep 2010

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A Structure-Based Approach for Mapping Adverse Drug Reactions to the Perturbation of Underlying Biological Pathways

Izhar Wallach, Navdeep Jaitly, Ryan Lilien

published 23 Aug 2010

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Superpose3D: A Local Structural Comparison Program That Allows for User-Defined Structure Representations

Pier Federico Gherardini, Gabriele Ausiello, Manuela Helmer-Citterich

published 05 Aug 2010

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Hydrophilicity Matching – A Potential Prerequisite for the Formation of Protein-Protein Complexes in the Cell

Mario Hlevnjak, Gordan Zitkovic, Bojan Zagrovic

published 17 Jun 2010

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