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Protein structure databases

A Topological Framework for the Computation of the HOMFLY Polynomial and Its Application to Proteins

Federico Comoglio, Maurizio Rinaldi

published 13 Apr 2011

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Assignment of PolyProline II Conformation and Analysis of Sequence – Structure Relationship

Yohann Mansiaux, Agnel Praveen Joseph, Jean-Christophe Gelly, Alexandre G. de Brevern

published 31 Mar 2011

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Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks

Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre G. de Brevern

published 18 Mar 2011

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Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein

Debanu Das, Mireille Hervé, Julie Feuerhelm, Carol L. Farr, Hsiu-Ju Chiu, Marc-André Elsliger, Mark W. Knuth, Heath E. Klock, Mitchell D. Miller, Adam Godzik, Scott A. Lesley, Ashley M. Deacon, Dominique Mengin-Lecreulx, Ian A. Wilson

published 18 Mar 2011

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TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi

published 08 Mar 2011

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Identification of Human IKK-2 Inhibitors of Natural Origin (Part I): Modeling of the IKK-2 Kinase Domain, Virtual Screening and Activity Assays

Esther Sala, Laura Guasch, Justyna Iwaszkiewicz, Miquel Mulero, Maria-Josepa Salvadó, Montserrat Pinent, Vincent Zoete, Aurélien Grosdidier, Santiago Garcia-Vallvé, Olivier Michielin, Gerard Pujadas

published 24 Feb 2011

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Understanding TR Binding to pMHC Complexes: How Does a TR Scan Many pMHC Complexes yet Preferentially Bind to One

Javed Mohammed Khan, Shoba Ranganathan

published 22 Feb 2011

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Incorporation of Local Structural Preference Potential Improves Fold Recognition

Yun Hu, Xiaoxi Dong, Aiping Wu, Yang Cao, Liqing Tian, Taijiao Jiang

published 18 Feb 2011

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Large Proteins Have a Great Tendency to Aggregate but a Low Propensity to Form Amyloid Fibrils

Hassan Ramshini, Claudia Parrini, Annalisa Relini, Mariagioia Zampagni, Benedetta Mannini, Alessandra Pesce, Ali Akbar Saboury, Mohsen Nemat-Gorgani, Fabrizio Chiti

published 13 Jan 2011

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The Combined Effects of Amino Acid Substitutions and Indels on the Evolution of Structure within Protein Families

Zheng Zhang, Yuxiao Wang, Lushan Wang, Peiji Gao

published 13 Dec 2010

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Symmetric Key Structural Residues in Symmetric Proteins with Beta-Trefoil Fold

Jianhui Feng, Mingfeng Li, Yanzhao Huang, Yi Xiao

published 30 Nov 2010

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Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Thomas Hamelryck, Mikael Borg, Martin Paluszewski, Jonas Paulsen, Jes Frellsen, Christian Andreetta, Wouter Boomsma, Sandro Bottaro, Jesper Ferkinghoff-Borg

published 10 Nov 2010

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Structural Studies of the Tandem Tudor Domains of Fragile X Mental Retardation Related Proteins FXR1 and FXR2

Melanie A. Adams-Cioaba, Yahong Guo, ChuanBing Bian, Maria F. Amaya, Robert Lam, Gregory A. Wasney, Masoud Vedadi, Chao Xu, Jinrong Min

published 02 Nov 2010

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