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Protein structure databases

Identification of Human IKK-2 Inhibitors of Natural Origin (Part I): Modeling of the IKK-2 Kinase Domain, Virtual Screening and Activity Assays

Esther Sala, Laura Guasch, Justyna Iwaszkiewicz, Miquel Mulero, Maria-Josepa Salvadó, Montserrat Pinent, Vincent Zoete, Aurélien Grosdidier, Santiago Garcia-Vallvé, Olivier Michielin, Gerard Pujadas

published 24 Feb 2011

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Understanding TR Binding to pMHC Complexes: How Does a TR Scan Many pMHC Complexes yet Preferentially Bind to One

Javed Mohammed Khan, Shoba Ranganathan

published 22 Feb 2011

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Incorporation of Local Structural Preference Potential Improves Fold Recognition

Yun Hu, Xiaoxi Dong, Aiping Wu, Yang Cao, Liqing Tian, Taijiao Jiang

published 18 Feb 2011

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Large Proteins Have a Great Tendency to Aggregate but a Low Propensity to Form Amyloid Fibrils

Hassan Ramshini, Claudia Parrini, Annalisa Relini, Mariagioia Zampagni, Benedetta Mannini, Alessandra Pesce, Ali Akbar Saboury, Mohsen Nemat-Gorgani, Fabrizio Chiti

published 13 Jan 2011

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The Combined Effects of Amino Acid Substitutions and Indels on the Evolution of Structure within Protein Families

Zheng Zhang, Yuxiao Wang, Lushan Wang, Peiji Gao

published 13 Dec 2010

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Symmetric Key Structural Residues in Symmetric Proteins with Beta-Trefoil Fold

Jianhui Feng, Mingfeng Li, Yanzhao Huang, Yi Xiao

published 30 Nov 2010

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Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Thomas Hamelryck, Mikael Borg, Martin Paluszewski, Jonas Paulsen, Jes Frellsen, Christian Andreetta, Wouter Boomsma, Sandro Bottaro, Jesper Ferkinghoff-Borg

published 10 Nov 2010

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Structural Studies of the Tandem Tudor Domains of Fragile X Mental Retardation Related Proteins FXR1 and FXR2

Melanie A. Adams-Cioaba, Yahong Guo, ChuanBing Bian, Maria F. Amaya, Robert Lam, Gregory A. Wasney, Masoud Vedadi, Chao Xu, Jinrong Min

published 02 Nov 2010

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A Novel Side-Chain Orientation Dependent Potential Derived from Random-Walk Reference State for Protein Fold Selection and Structure Prediction

Jian Zhang, Yang Zhang

published 27 Oct 2010

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Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Yoojin Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum

published 22 Oct 2010

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Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chia-Han Chu, Wei-Cheng Lo, Hsin-Wei Wang, Yen-Chu Hsu, Jenn-Kang Hwang, Ping-Chiang Lyu, Tun-Wen Pai, Chuan Yi Tang

published 14 Oct 2010

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Sub-Nanoscale Surface Ruggedness Provides a Water-Tight Seal for Exposed Regions in Soluble Protein Structure

Erica Schulz, Marisa Frechero, Gustavo Appignanesi, Ariel Fernández

published 17 Sep 2010

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Molecular Modeling of Mechanosensory Ion Channel Structural and Functional Features

Renate Gessmann, Nikos Kourtis, Kyriacos Petratos, Nektarios Tavernarakis

published 16 Sep 2010

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