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Protein structure databases

Identification of Antifreeze Proteins and Their Functional Residues by Support Vector Machine and Genetic Algorithms based on n-Peptide Compositions

Chin-Sheng Yu, Chih-Hao Lu

published 31 May 2011

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HIVToolbox, an Integrated Web Application for Investigating HIV

David Sargeant, Sandeep Deverasetty, Yang Luo, Angel Villahoz Baleta, Stephanie Zobrist, Viraj Rathnayake, Jacqueline C. Russo, Jay Vyas, Mark A. Muesing, Martin R. Schiller

published 25 May 2011

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Structural Similarity and Classification of Protein Interaction Interfaces

Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin

published 12 May 2011

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Mapping the Binding between the Tetraspanin Molecule (Sjc23) of Schistosoma japonicum and Human Non-Immune IgG

Chuang Wu, Pengfei Cai, Qiaocheng Chang, Lili Hao, Shuai Peng, Xiaojing Sun, Huijun Lu, Jigang Yin, Ning Jiang, Qijun Chen

published 20 Apr 2011

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A Topological Framework for the Computation of the HOMFLY Polynomial and Its Application to Proteins

Federico Comoglio, Maurizio Rinaldi

published 13 Apr 2011

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Assignment of PolyProline II Conformation and Analysis of Sequence – Structure Relationship

Yohann Mansiaux, Agnel Praveen Joseph, Jean-Christophe Gelly, Alexandre G. de Brevern

published 31 Mar 2011

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Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks

Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre G. de Brevern

published 18 Mar 2011

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Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein

Debanu Das, Mireille Hervé, Julie Feuerhelm, Carol L. Farr, Hsiu-Ju Chiu, Marc-André Elsliger, Mark W. Knuth, Heath E. Klock, Mitchell D. Miller, Adam Godzik, Scott A. Lesley, Ashley M. Deacon, Dominique Mengin-Lecreulx, Ian A. Wilson

published 18 Mar 2011

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TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi

published 08 Mar 2011

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Identification of Human IKK-2 Inhibitors of Natural Origin (Part I): Modeling of the IKK-2 Kinase Domain, Virtual Screening and Activity Assays

Esther Sala, Laura Guasch, Justyna Iwaszkiewicz, Miquel Mulero, Maria-Josepa Salvadó, Montserrat Pinent, Vincent Zoete, Aurélien Grosdidier, Santiago Garcia-Vallvé, Olivier Michielin, Gerard Pujadas

published 24 Feb 2011

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Understanding TR Binding to pMHC Complexes: How Does a TR Scan Many pMHC Complexes yet Preferentially Bind to One

Javed Mohammed Khan, Shoba Ranganathan

published 22 Feb 2011

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Incorporation of Local Structural Preference Potential Improves Fold Recognition

Yun Hu, Xiaoxi Dong, Aiping Wu, Yang Cao, Liqing Tian, Taijiao Jiang

published 18 Feb 2011

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Large Proteins Have a Great Tendency to Aggregate but a Low Propensity to Form Amyloid Fibrils

Hassan Ramshini, Claudia Parrini, Annalisa Relini, Mariagioia Zampagni, Benedetta Mannini, Alessandra Pesce, Ali Akbar Saboury, Mohsen Nemat-Gorgani, Fabrizio Chiti

published 13 Jan 2011

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