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Protein structure databases

Pattern of Amino Acid Substitutions in Transmembrane Domains of β-Barrel Membrane Proteins for Detecting Remote Homologs in Bacteria and Mitochondria

David Jimenez-Morales, Jie Liang

published 01 Nov 2011

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Structural Annotation of Mycobacterium tuberculosis Proteome

Praveen Anand, Sandhya Sankaran, Sumanta Mukherjee, Kalidas Yeturu, Roman Laskowski, Anshu Bhardwaj, Raghu Bhagavat, OSDD Consortium , Samir K. Brahmachari, Nagasuma Chandra

published 31 Oct 2011

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Structural Basis for Broad Neutralization of Hepatitis C Virus Quasispecies

Pascal Lapierre, Myriam Troesch, Fernando Alvarez, Hugo Soudeyns

published 26 Oct 2011

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Tyrosine Deprotonation and Associated Hydrogen Bond Rearrangements in a Photosynthetic Reaction Center

Hiroshi Ishikita

published 24 Oct 2011

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In Silico Analysis of Single Nucleotide Polymorphism (SNPs) in Human β-Globin Gene

Mohammed Alanazi, Zainularifeen Abduljaleel, Wajahatullah Khan, Arjumand S. Warsy, Mohamed Elrobh, Zahid Khan, Abdullah Al Amri, Mohammad D. Bazzi

published 20 Oct 2011

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Minimal Functional Sites Allow a Classification of Zinc Sites in Proteins

Claudia Andreini, Ivano Bertini, Gabriele Cavallaro

published 17 Oct 2011

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Peptide Bond Distortions from Planarity: New Insights from Quantum Mechanical Calculations and Peptide/Protein Crystal Structures

Roberto Improta, Luigi Vitagliano, Luciana Esposito

published 16 Sep 2011

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Get Phases from Arsenic Anomalous Scattering: de novo SAD Phasing of Two Protein Structures Crystallized in Cacodylate Buffer

Xiang Liu, Heng Zhang, Xiao-Jun Wang, Lan-Fen Li, Xiao-Dong Su

published 02 Sep 2011

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RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design

Po-Ssu Huang, Yih-En Andrew Ban, Florian Richter, Ingemar Andre, Robert Vernon, William R. Schief, David Baker

published 31 Aug 2011

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Multicoil2: Predicting Coiled Coils and Their Oligomerization States from Sequence in the Twilight Zone

Jason Trigg, Karl Gutwin, Amy E. Keating, Bonnie Berger

published 25 Aug 2011

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Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

Dominik Gront, Daniel W. Kulp, Robert M. Vernon, Charlie E. M. Strauss, David Baker

published 24 Aug 2011

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Protein X of Hepatitis B Virus: Origin and Structure Similarity with the Central Domain of DNA Glycosylase

Formijn J. van Hemert, Maarten A. A. van de Klundert, Vladimir V. Lukashov, Neeltje A. Kootstra, Ben Berkhout, Hans L. Zaaijer

published 05 Aug 2011

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Predicting Inactive Conformations of Protein Kinases Using Active Structures: Conformational Selection of Type-II Inhibitors

Min Xu, Lu Yu, Bo Wan, Long Yu, Qiang Huang

published 27 Jul 2011

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