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Protein structure databases

RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design

Po-Ssu Huang, Yih-En Andrew Ban, Florian Richter, Ingemar Andre, Robert Vernon, William R. Schief, David Baker

published 31 Aug 2011

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Multicoil2: Predicting Coiled Coils and Their Oligomerization States from Sequence in the Twilight Zone

Jason Trigg, Karl Gutwin, Amy E. Keating, Bonnie Berger

published 25 Aug 2011

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Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

Dominik Gront, Daniel W. Kulp, Robert M. Vernon, Charlie E. M. Strauss, David Baker

published 24 Aug 2011

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Protein X of Hepatitis B Virus: Origin and Structure Similarity with the Central Domain of DNA Glycosylase

Formijn J. van Hemert, Maarten A. A. van de Klundert, Vladimir V. Lukashov, Neeltje A. Kootstra, Ben Berkhout, Hans L. Zaaijer

published 05 Aug 2011

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Predicting Inactive Conformations of Protein Kinases Using Active Structures: Conformational Selection of Type-II Inhibitors

Min Xu, Lu Yu, Bo Wan, Long Yu, Qiang Huang

published 27 Jul 2011

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Why Does the Giant Panda Eat Bamboo? A Comparative Analysis of Appetite-Reward-Related Genes among Mammals

Ke Jin, Chenyi Xue, Xiaoli Wu, Jinyi Qian, Yong Zhu, Zhen Yang, Takahiro Yonezawa, M. James C. Crabbe, Ying Cao, Masami Hasegawa, Yang Zhong, Yufang Zheng

published 27 Jul 2011

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Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs

Ahmed Sayadi, Leonardo Briganti, Anna Tramontano, Allegra Via

published 20 Jul 2011

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Small Cofactors May Assist Protein Emergence from RNA World: Clues from RNA-Protein Complexes

Liang Shen, Hong-Fang Ji

published 18 Jul 2011

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A Coarse-Grained Approach to Protein Design: Learning from Design to Understand Folding

Ivan Coluzza

published 01 Jul 2011

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New Structural and Functional Contexts of the Dx[DN]xDG Linear Motif: Insights into Evolution of Calcium-Binding Proteins

Daniel J. Rigden, Duncan D. Woodhead, Prudence W. H. Wong, Michael Y. Galperin

published 24 Jun 2011

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Anchored Design of Protein-Protein Interfaces

Steven M. Lewis, Brian A. Kuhlman

published 17 Jun 2011

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Structure Collisions between Interacting Proteins

Dorothea Emig, Oliver Sander, Gabriele Mayr, Mario Albrecht

published 02 Jun 2011

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Construction of Chimeric Dual-Chain Avidin by Tandem Fusion of the Related Avidins

Tiina A. Riihimäki, Sampo Kukkurainen, Suvi Varjonen, Jarno Hörhä, Thomas K. M. Nyholm, Markku S. Kulomaa, Vesa P. Hytönen

published 31 May 2011

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