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Protein structure databases

RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design

Po-Ssu Huang, Yih-En Andrew Ban, [ ... ], David Baker

Multicoil2: Predicting Coiled Coils and Their Oligomerization States from Sequence in the Twilight Zone

Jason Trigg, Karl Gutwin, Amy E. Keating, Bonnie Berger

Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

Dominik Gront, Daniel W. Kulp, [ ... ], David Baker

Protein X of Hepatitis B Virus: Origin and Structure Similarity with the Central Domain of DNA Glycosylase

Formijn J. van Hemert, Maarten A. A. van de Klundert, [ ... ], Hans L. Zaaijer

Predicting Inactive Conformations of Protein Kinases Using Active Structures: Conformational Selection of Type-II Inhibitors

Min Xu, Lu Yu, [ ... ], Qiang Huang

Why Does the Giant Panda Eat Bamboo? A Comparative Analysis of Appetite-Reward-Related Genes among Mammals

Ke Jin, Chenyi Xue, [ ... ], Yufang Zheng

Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs

Ahmed Sayadi, Leonardo Briganti, Anna Tramontano, Allegra Via

Small Cofactors May Assist Protein Emergence from RNA World: Clues from RNA-Protein Complexes

Liang Shen, Hong-Fang Ji

A Coarse-Grained Approach to Protein Design: Learning from Design to Understand Folding

Ivan Coluzza

New Structural and Functional Contexts of the Dx[DN]xDG Linear Motif: Insights into Evolution of Calcium-Binding Proteins

Daniel J. Rigden, Duncan D. Woodhead, Prudence W. H. Wong, Michael Y. Galperin

Anchored Design of Protein-Protein Interfaces

Steven M. Lewis, Brian A. Kuhlman

Structure Collisions between Interacting Proteins

Dorothea Emig, Oliver Sander, Gabriele Mayr, Mario Albrecht

Construction of Chimeric Dual-Chain Avidin by Tandem Fusion of the Related Avidins

Tiina A. Riihimäki, Sampo Kukkurainen, [ ... ], Vesa P. Hytönen

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