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Protein structure databases

Identification of Nucleotide-Binding Sites in Protein Structures: A Novel Approach Based on Nucleotide Modularity

Luca Parca, Pier Federico Gherardini, Mauro Truglio, Iolanda Mangone, Fabrizio Ferrè, Manuela Helmer-Citterich, Gabriele Ausiello

published 27 Nov 2012

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Prediction of Protein-Destabilizing Polymorphisms by Manual Curation with Protein Structure

Craig Alan Gough, Keiichi Homma, Yumi Yamaguchi-Kabata, Makoto K. Shimada, Ranajit Chakraborty, Yasuyuki Fujii, Hisakazu Iwama, Shinsei Minoshima, Shigetaka Sakamoto, Yoshiharu Sato, Yoshiyuki Suzuki, Masahito Tada-Umezaki, Ken Nishikawa, Tadashi Imanishi, Takashi Gojobori

published 26 Nov 2012

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CyanoPhyChe: A Database for Physico-Chemical Properties, Structure and Biochemical Pathway Information of Cyanobacterial Proteins

P. V. Parvati Sai Arun, Ranjith Kumar Bakku, Mranu Subhashini, Pankaj Singh, N. Prakash Prabhu, Iwane Suzuki, Jogadhenu S. S. Prakash

published 21 Nov 2012

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BCL::Score—Knowledge Based Energy Potentials for Ranking Protein Models Represented by Idealized Secondary Structure Elements

Nils Woetzel, Mert Karakaş, Rene Staritzbichler, Ralf Müller, Brian E. Weiner, Jens Meiler

published 16 Nov 2012

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BCL::Fold - De Novo Prediction of Complex and Large Protein Topologies by Assembly of Secondary Structure Elements

Mert Karakaş, Nils Woetzel, Rene Staritzbichler, Nathan Alexander, Brian E. Weiner, Jens Meiler

published 16 Nov 2012

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An Integrative Computational Framework Based on a Two-Step Random Forest Algorithm Improves Prediction of Zinc-Binding Sites in Proteins

Cheng Zheng, Mingjun Wang, Kazuhiro Takemoto, Tatsuya Akutsu, Ziding Zhang, Jiangning Song

published 14 Nov 2012

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Predicting Turns in Proteins with a Unified Model

Qi Song, Tonghua Li, Peisheng Cong, Jiangming Sun, Dapeng Li, Shengnan Tang

published 07 Nov 2012

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Identification of Functional SNPs in BARD1 Gene and In Silico Analysis of Damaging SNPs: Based on Data Procured from dbSNP Database

Ali A. Alshatwi, Tarique N. Hasan, Naveed A. Syed, Gowhat Shafi, B. Leena Grace

published 09 Oct 2012

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BioFET-SIM Web Interface: Implementation and Two Applications

Martin R. Hediger, Jan H. Jensen, Luca De Vico

published 08 Oct 2012

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Disordered Binding Regions and Linear Motifs—Bridging the Gap between Two Models of Molecular Recognition

Bálint Mészáros, Zsuzsanna Dosztányi, István Simon

published 03 Oct 2012

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Humanization and Characterization of an Anti-Ricin Neutralization Monoclonal Antibody

Wei-Gang Hu, Junfei Yin, Damon Chau, Laurel M. Negrych, John W. Cherwonogrodzky

published 26 Sep 2012

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Enhanced Solubilisation of Six PAHs by Three Synthetic Cyclodextrins for Remediation Applications: Molecular Modelling of the Inclusion Complexes

Esmeralda Morillo, María Antonia Sánchez-Trujillo, José Ramón Moyano, Jaime Villaverde, María Eulalia Gómez-Pantoja, José Ignacio Pérez-Martínez

published 19 Sep 2012

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Co-Crystalization and In Vitro Biological Characterization of 5-Aryl-4-(5-Substituted-2-4-Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors

Swee Y. Sharp, S. Mark Roe, Egidijus Kazlauskas, Inga Čikotienė, Paul Workman, Daumantas Matulis, Chrisostomos Prodromou

published 11 Sep 2012

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